View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13513_high_2 (Length: 468)
Name: NF13513_high_2
Description: NF13513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13513_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 39174186 - 39173789
Alignment:
| Q |
1 |
taagcaaaatgaaaatgagttaaattttcagagattgatattcattttctcttgtttttgttaaattggaatcaatcaagttactgtcttggatgaggaa |
100 |
Q |
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| T |
39174186 |
taagcaaaatgaatatgagttaaattttcagagattgatattcattttctcttgtttttgttaaattggaatcaatcaagttactgtcttggatgaggaa |
39174087 |
T |
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| Q |
101 |
gaccattaaattttacttccaaaagaggacgtctgttattgttggagatgtgagcttcttttttctacaccataatgttactttgctacgttagttcctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39174086 |
gaccattaaattttacttccaaaagaggacgtctgttattgttggagatgtgagcttcttttttctacaccataatgttactttgttacgttagttcctg |
39173987 |
T |
|
| Q |
201 |
aatcatcttcacaaatatctacattgtacgatgtgactgaaattgaatgcacgtat--aaaacaactttaaactaactgtgcatacaaactaaattatta |
298 |
Q |
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| T |
39173986 |
aatcatcttcacaaatatctacattgtacgatgtgac------taaatgcacgtatacaaagtaattttagactaactgtgcatacaaagtaaattgtta |
39173893 |
T |
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| Q |
299 |
acattttgtatcagttgaaataagcctatgcatctcaatttatccatatgcacactaggttaacattttcatgatcgatcagcaataacaaaagtattag |
398 |
Q |
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| T |
39173892 |
acattttgtatcagttgaaataagcctatgcatctcaatttatccatatgcacactaggttaacattttcatgatcgatcaacaataacaaaagtattag |
39173793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 39170563 - 39170241
Alignment:
| Q |
1 |
taagcaaaatgaaaatgagttaaattttcagagattgatattcattttctcttgtttttgttaaattggaatcaatcaagttactgtcttggatgaggaa |
100 |
Q |
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| T |
39170563 |
taagaaaaacgaatatgagttaaattttcagagattgatattcattttctcctgtttttgttaaactggaatcgatcaagttactgtcttggatgaggaa |
39170464 |
T |
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| Q |
101 |
gaccattaaattttacttccaaaagaggacgtctgttattgttggagatgtgagcttcttttttctacaccataatgttactttgctacgttagttcctg |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
39170463 |
gaccgttaaattttacttccaaaagaggacgtctgttcttgttggagatgtgagcttcttttttctacaccataatgttactttgttatgttagttcctg |
39170364 |
T |
|
| Q |
201 |
aatcatcttcacaaatatctacattgtacgatgtgactgaaattgaatgcacgtataaaacaactttaaactaactgtgcatacaaactaaattattaac |
300 |
Q |
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| T |
39170363 |
aatcatcttcacaaatatctacattgtacgatgtgactgaaattgaatgcacgtataaaacaactttaaactaagtgtgcatacaaagtaaattattaac |
39170264 |
T |
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| Q |
301 |
attttgtatcagttgaaataagc |
323 |
Q |
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| T |
39170263 |
cttttgtataagttgaaataagc |
39170241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 325 - 396
Target Start/End: Complemental strand, 39169922 - 39169851
Alignment:
| Q |
325 |
tatgcatctcaatttatccatatgcacactaggttaacattttcatgatcgatcagcaataacaaaagtatt |
396 |
Q |
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| T |
39169922 |
tatgcatctcaatttatccatatgcacactaggttaacattttcatgatcaatcaacaataacaaaagtatt |
39169851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 39179178 - 39179094
Alignment:
| Q |
318 |
ataagcctatgcatctcaatttatccatatgcacactaggttaacattttcatgatcgatcagcaataacaaaagtattaggaag |
402 |
Q |
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| T |
39179178 |
ataagcttatgtatctctgtttatccatatgtgcactcggttaacattttcatgatcaatcaacaataccaaaagtattaggaag |
39179094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 449
Target Start/End: Complemental strand, 39173804 - 39173774
Alignment:
| Q |
419 |
caaaagtattaggaagaaaagatatcagctt |
449 |
Q |
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| T |
39173804 |
caaaagtattaggaagaaaagatatcagctt |
39173774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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