View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13513_low_10 (Length: 220)

Name: NF13513_low_10
Description: NF13513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13513_low_10
NF13513_low_10
[»] chr1 (13 HSPs)
chr1 (1-220)||(8347636-8347855)
chr1 (3-149)||(49495568-49495715)
chr1 (157-220)||(50077154-50077217)
chr1 (158-220)||(31423397-31423459)
chr1 (154-197)||(17318611-17318654)
chr1 (1-46)||(8349416-8349461)
chr1 (175-220)||(8954353-8954398)
chr1 (175-215)||(16430804-16430844)
chr1 (154-198)||(40133656-40133700)
chr1 (155-196)||(12302991-12303032)
chr1 (175-220)||(25127571-25127615)
chr1 (175-220)||(25249033-25249078)
chr1 (154-198)||(50308036-50308079)
[»] chr8 (5 HSPs)
chr8 (14-191)||(2268691-2268868)
chr8 (94-189)||(30422850-30422945)
chr8 (159-220)||(21482099-21482160)
chr8 (175-220)||(31574228-31574273)
chr8 (154-196)||(30481054-30481096)
[»] chr7 (8 HSPs)
chr7 (4-196)||(24817716-24817909)
chr7 (154-220)||(9680518-9680583)
chr7 (160-220)||(24815587-24815647)
chr7 (177-220)||(44726592-44726635)
chr7 (154-198)||(20137626-20137670)
chr7 (1-46)||(24465420-24465465)
chr7 (176-220)||(21679733-21679777)
chr7 (154-196)||(4296413-4296455)
[»] chr6 (8 HSPs)
chr6 (72-196)||(15719423-15719547)
chr6 (154-220)||(3396071-3396137)
chr6 (175-220)||(3630401-3630446)
chr6 (175-220)||(26944902-26944947)
chr6 (175-220)||(28038235-28038280)
chr6 (158-196)||(3390132-3390170)
chr6 (4-41)||(15719556-15719593)
chr6 (157-197)||(32447836-32447876)
[»] chr3 (12 HSPs)
chr3 (157-220)||(890269-890332)
chr3 (155-220)||(3306494-3306559)
chr3 (159-220)||(23636703-23636764)
chr3 (175-220)||(25635098-25635143)
chr3 (175-220)||(28100577-28100622)
chr3 (175-219)||(28137810-28137854)
chr3 (154-196)||(6231169-6231211)
chr3 (175-220)||(14634683-14634727)
chr3 (175-220)||(43421950-43421995)
chr3 (157-197)||(47149418-47149458)
chr3 (152-196)||(54692067-54692111)
chr3 (191-220)||(1619199-1619228)
[»] chr2 (5 HSPs)
chr2 (157-216)||(31733245-31733304)
chr2 (154-198)||(38414525-38414569)
chr2 (154-197)||(45239458-45239501)
chr2 (154-195)||(17848812-17848853)
chr2 (154-196)||(28196334-28196376)
[»] chr4 (9 HSPs)
chr4 (154-220)||(12396363-12396429)
chr4 (154-220)||(12401305-12401371)
chr4 (178-220)||(18535319-18535361)
chr4 (175-220)||(36380137-36380182)
chr4 (175-219)||(27498942-27498986)
chr4 (175-215)||(47564479-47564519)
chr4 (154-197)||(33415977-33416020)
chr4 (178-220)||(16455025-16455067)
chr4 (158-196)||(37313562-37313600)
[»] chr5 (4 HSPs)
chr5 (175-220)||(20044733-20044778)
chr5 (154-196)||(1190112-1190154)
chr5 (154-198)||(16092702-16092746)
chr5 (154-198)||(31473108-31473152)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 8347636 - 8347855
Alignment:
Q  1 cccataaaaatacgttttatttttatgttgttacgacaatttgggcgttgattttgaccatccgggccccgaaaaatgtcgaataaaaagtatccaaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| | ||||||    
T  8347636 cccataaaaatacgttttatttttatgttgttacgacaatttgggcgtcgattttgaccatccgggcctcgaaaaatgtcaaataaaaagtcttcaaaaa 8347735  T
Q  101 catgcaaaattctggccccggacaacatcattcgggccccgattttgactttccagcaaacttcaatttctcagattttgagtcactttcacaacaatct 200  Q
    ||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  8347736 cattccaaattcgggccccggacaacatcattcgggccccgattttgactttccagcaaatttcaatttctcagattttgagtcactttcacaataatct 8347835  T
Q  201 ccaccttgactctaaattag 220  Q
    ||||||||||||||||||||    
T  8347836 ccaccttgactctaaattag 8347855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 49495568 - 49495715
Alignment:
Q  3 cataaaaatacgttttatttttatgttgttacgacaatttgggcgttgattttgaccatccgggccccgaaaaatgtcgaataaaaag-tatccaaaaac 101  Q
    ||||||||||||||||||||||||| | ||||||||||| |||||  |||||||||||| |||||||||||||||||||||| ||| |   | ||||||     
T  49495568 cataaaaatacgttttatttttatgctattacgacaattcgggcgccgattttgaccattcgggccccgaaaaatgtcgaatcaaatgcccttcaaaaat 49495667  T
Q  102 atgcaaaattctggccccggacaacatcattcgggccccgattttgac 149  Q
    |  |||||||| |||||||||||  | |||||||||||||||||||||    
T  49495668 agacaaaattcgggccccggacagaaccattcgggccccgattttgac 49495715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 50077154 - 50077217
Alignment:
Q  157 caaacttcaatttctcagattttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  50077154 caaacttcaatttctctaattttgagtcactttcacaacaatctccaccttgactctaaattag 50077217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 31423397 - 31423459
Alignment:
Q  158 aaacttcaatttctcagattttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    |||| |||||||||   |||||||||||||||||||||||||| |||||||||||||||||||    
T  31423397 aaacctcaatttcttcaattttgagtcactttcacaacaatcttcaccttgactctaaattag 31423459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 17318654 - 17318611
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaacaa 197  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  17318654 cagcaaacttcaatttctccgattttgagtcactttcacaacaa 17318611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8349416 - 8349461
Alignment:
Q  1 cccataaaaatacgttttatttttatgttgttacgacaatttgggc 46  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  8349416 cccataaaattacgttttatttttatgttgttacgacaattcgggc 8349461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 8954398 - 8954353
Alignment:
Q  175 attttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||    
T  8954398 attttgagtcactttcacaacaatttccaccttgactcttaattag 8954353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 16430844 - 16430804
Alignment:
Q  175 attttgagtcactttcacaacaatctccaccttgactctaa 215  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  16430844 attttgagtcactttcacaacaatctccactttgactctaa 16430804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 40133700 - 40133656
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaacaat 198  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  40133700 cagcaaacttcaatttctctaattttgagtcactttcacaacaat 40133656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 12302991 - 12303032
Alignment:
Q  155 agcaaacttcaatttctcagattttgagtcactttcacaaca 196  Q
    ||||||||||||||||||  ||||||| ||||||||||||||    
T  12302991 agcaaacttcaatttctccaattttgaatcactttcacaaca 12303032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 25127615 - 25127571
Alignment:
Q  175 attttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    ||||||||||| || | |||||||||||||||||||||||||||||    
T  25127615 attttgagtcaatt-ctcaacaatctccaccttgactctaaattag 25127571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 25249033 - 25249078
Alignment:
Q  175 attttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    |||||||| |||| |||||||||||||| ||||||| |||||||||    
T  25249033 attttgaggcactatcacaacaatctcctccttgaccctaaattag 25249078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 50308036 - 50308079
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaacaat 198  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||    
T  50308036 cagcaaact-caatttctccaattttgagtcactttcacaacaat 50308079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 2268691 - 2268868
Alignment:
Q  14 gttttatttttatgttgttacgacaatttgggcgttgattttgaccatccgggccccgaaaaatgtcgaataaaaagtatccaaaaacatgcaaaattct 113  Q
    ||||||||||| || || | ||||||||||||||  |||||||||||| ||| ||||| ||||| |||||| ||| || | |||||||| || |||||      
T  2268691 gttttatttttctgctgctgcgacaatttgggcgccgattttgaccattcggcccccgtaaaatatcgaatcaaatgtcttcaaaaacaggcgaaatttg 2268790  T
Q  114 ggccccggacaacatcattcgggccccgattttgactttccagcaaacttcaatttctcagattttgagtcactttca 191  Q
    |||||| || | || ||||||| |||| |||||||||||||||||||||| |||||||   |||||||||||||||||    
T  2268791 ggccccagatagcaccattcggtccccaattttgactttccagcaaactttaatttcttcaattttgagtcactttca 2268868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 94 - 189
Target Start/End: Complemental strand, 30422945 - 30422850
Alignment:
Q  94 ccaaaaacatgcaaaattctggccccggacaacatcattcgggccccgattttgactttccagcaaacttcaatttctcagattttgagtcacttt 189  Q
    ||||||||| ||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  30422945 ccaaaaacaggcaaaattcgggccctggacagcaccattcgggccccgattttgactttccagcaaacttcaatttcttcaattttgagtcacttt 30422850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 21482160 - 21482099
Alignment:
Q  159 aacttcaatttctcagattttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    |||||||||||||   |||||||||||||||||||| |||||||||||||||||||||||||    
T  21482160 aacttcaatttcttcaattttgagtcactttcacaataatctccaccttgactctaaattag 21482099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 31574228 - 31574273
Alignment:
Q  175 attttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||    
T  31574228 attttgagtcactttcacaacattcttcaccttgactctaaattag 31574273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 30481054 - 30481096
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaaca 196  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  30481054 cagcaaacttcaatttctccaattttgagtcactttcacaaca 30481096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 196
Target Start/End: Original strand, 24817716 - 24817909
Alignment:
Q  4 ataaaaatacgttttatttttatgttgttacgacaattt-gggcgttgattttgaccatccgggccccgaaaaatgtcgaataaaaagtatccaaaaaca 102  Q
    |||||||||||||| ||||||||||||| ||||||| || |||||  |||||||||||| |||||| ||||||||||||||| ||| || | ||||||||    
T  24817716 ataaaaatacgttt-atttttatgttgtcacgacaaattcgggcgccgattttgaccattcgggccacgaaaaatgtcgaatcaaatgtcttcaaaaaca 24817814  T
Q  103 tgcaaaattctggccccggacaacatcattcgggccccgattttgac-tttccagcaaacttcaatttctcagattttgagtcactttcacaaca 196  Q
     |||||||||   | | |  || || |||||||| ||||||||||||   | || ||||||||||||||||  ||||||||||||||||||||||    
T  24817815 ggcaaaattcgatcgctgtgcagcaccattcgggtcccgattttgacaaattcaacaaacttcaatttctccaattttgagtcactttcacaaca 24817909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 9680583 - 9680518
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  9680583 cagcaaactt-aatttctccaattttgagtcactttcacaacaatctccaccttgactctaaattag 9680518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 24815587 - 24815647
Alignment:
Q  160 acttcaatttctcagattttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    |||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||    
T  24815587 acttcaatttctccaattttgagtgactttcacaacaatctccaccttgactctaaattag 24815647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 44726635 - 44726592
Alignment:
Q  177 tttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  44726635 tttgaggcactttcacaacaatctccaccttgactctaaattag 44726592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 20137626 - 20137670
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaacaat 198  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  20137626 cagcaaacttcaatttctccaattttgagtcactttcacaacaat 20137670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24465465 - 24465420
Alignment:
Q  1 cccataaaaatacgttttatttttatgttgttacgacaatttgggc 46  Q
    |||||||||| |||||||||||||||| ||||||||||||| ||||    
T  24465465 cccataaaaaaacgttttatttttatgctgttacgacaattcgggc 24465420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 21679777 - 21679733
Alignment:
Q  176 ttttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    ||||||| ||||||||||| |||||||||||||||| ||||||||    
T  21679777 ttttgaggcactttcacaataatctccaccttgactttaaattag 21679733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 4296413 - 4296455
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaaca 196  Q
    |||||| ||||||||||||  ||||||||||||||||||||||    
T  4296413 cagcaagcttcaatttctccaattttgagtcactttcacaaca 4296455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 72 - 196
Target Start/End: Complemental strand, 15719547 - 15719423
Alignment:
Q  72 aaaaatgtcgaataaaaagtatccaaaaacatgcaaaattctggccccggacaacatcattcgggccccgattttgac-tttccagcaaacttcaatttc 170  Q
    |||||||||||||||||||| |||||||||| ||||||||| || |||  |||||| |||||||||||||||||||||   | |||||||||| ||||||    
T  15719547 aaaaatgtcgaataaaaagtctccaaaaacaggcaaaattc-gggcccaaacaacaccattcgggccccgattttgacagattcagcaaactttaatttc 15719449  T
Q  171 tcagattttgagtcactttcacaaca 196  Q
    ||  ||||||||||||||||||||||    
T  15719448 tccaattttgagtcactttcacaaca 15719423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 3396137 - 3396071
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  3396137 cagcaaacttcaatttctccaattttgagtcactttcacaacaatctccaccttgactctaaattag 3396071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 3630401 - 3630446
Alignment:
Q  175 attttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||    
T  3630401 attttgaggcactttcacaacaatctccaccttgactcaaaattag 3630446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 26944947 - 26944902
Alignment:
Q  175 attttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||    
T  26944947 attttgagtcactttcacaacaatttccaccttgtctctaaattag 26944902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 28038235 - 28038280
Alignment:
Q  175 attttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  28038235 attttaagtcactttcacaacaatctccaccttgactttaaattag 28038280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 3390170 - 3390132
Alignment:
Q  158 aaacttcaatttctcagattttgagtcactttcacaaca 196  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  3390170 aaacttcaatttctccaattttgagtcactttcacaaca 3390132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 15719593 - 15719556
Alignment:
Q  4 ataaaaatacgttttatttttatgttgttacgacaatt 41  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  15719593 ataaaaatacgttttatttttatgatgttatgacaatt 15719556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 32447836 - 32447876
Alignment:
Q  157 caaacttcaatttctcagattttgagtcactttcacaacaa 197  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  32447836 caaacttaaatttctccaattttgagtcactttcacaacaa 32447876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 890269 - 890332
Alignment:
Q  157 caaacttcaatttctcagattttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||    
T  890269 caaacttcaatttctccaattttgagtcactttcataacaatctccaccttgactctaaattag 890332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 3306559 - 3306494
Alignment:
Q  155 agcaaacttcaatttctcagattttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    ||||||||||||||||||  |||||||||||||||||||||| |||||||||| ||||||||||||    
T  3306559 agcaaacttcaatttctccaattttgagtcactttcacaacattctccaccttaactctaaattag 3306494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 23636764 - 23636703
Alignment:
Q  159 aacttcaatttctcagattttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    |||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  23636764 aactccaatttctccaattttgagtcactttcacaacaatctccaccttgactctaaattag 23636703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 25635143 - 25635098
Alignment:
Q  175 attttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  25635143 attttgagtcactttcacaacaatctccaccttgactctaaattag 25635098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 28100577 - 28100622
Alignment:
Q  175 attttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  28100577 attttgaggcactttcacaacaatctccaccttgactctaaattag 28100622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 28137810 - 28137854
Alignment:
Q  175 attttgagtcactttcacaacaatctccaccttgactctaaatta 219  Q
    |||||||| |||||||||||||||||||||||||||| |||||||    
T  28137810 attttgaggcactttcacaacaatctccaccttgactttaaatta 28137854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 6231211 - 6231169
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaaca 196  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  6231211 cagcaaacttcaatttctccaattttgagtcactttcacaaca 6231169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 14634683 - 14634727
Alignment:
Q  175 attttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    ||||||||||||| || |||||||||||||||||||||||||||||    
T  14634683 attttgagtcactctc-caacaatctccaccttgactctaaattag 14634727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 43421950 - 43421995
Alignment:
Q  175 attttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    |||||||| ||||||||||||||| ||||||||||||| |||||||    
T  43421950 attttgaggcactttcacaacaatttccaccttgactccaaattag 43421995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 47149418 - 47149458
Alignment:
Q  157 caaacttcaatttctcagattttgagtcactttcacaacaa 197  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  47149418 caaacttcaatttctccaattttgagtcactttcacaacaa 47149458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 54692067 - 54692111
Alignment:
Q  152 tccagcaaacttcaatttctcagattttgagtcactttcacaaca 196  Q
    |||||||||||||||||||||  ||||| ||||||||||||||||    
T  54692067 tccagcaaacttcaatttctccaattttaagtcactttcacaaca 54692111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 1619199 - 1619228
Alignment:
Q  191 acaacaatctccaccttgactctaaattag 220  Q
    ||||||||||||||||||||||||||||||    
T  1619199 acaacaatctccaccttgactctaaattag 1619228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 31733245 - 31733304
Alignment:
Q  157 caaacttcaatttctcagattttgagtcactttcacaacaatctccaccttgactctaaa 216  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  31733245 caaacttcaatttctccaattttgagtcactttcacaacaatctccaccttgactctaaa 31733304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 38414525 - 38414569
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaacaat 198  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  38414525 cagcaaacttcaatttctccaattttgagtcactttcacaacaat 38414569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 45239458 - 45239501
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaacaa 197  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  45239458 cagcaaacttcaatttctccaattttgagtcactttcacaacaa 45239501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 17848853 - 17848812
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaac 195  Q
    |||||||||||||||||||  |||||||||||||||||||||    
T  17848853 cagcaaacttcaatttctccaattttgagtcactttcacaac 17848812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 28196376 - 28196334
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaaca 196  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  28196376 cagcaaacttcaatttctccatttttgagtcactttcacaaca 28196334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 12396363 - 12396429
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    |||||||||| ||||||||  ||||||||| ||||||||||||||||||||||||| ||||||||||    
T  12396363 cagcaaacttgaatttctccaattttgagtaactttcacaacaatctccaccttgaatctaaattag 12396429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 12401305 - 12401371
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    |||||||||| ||||||||  ||||||||| ||||||||||||||||||||||||| ||||||||||    
T  12401305 cagcaaacttgaatttctccaattttgagtaactttcacaacaatctccaccttgaatctaaattag 12401371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 18535319 - 18535361
Alignment:
Q  178 ttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18535319 ttgagtcactttcacaacaatctccaccttgactctaaattag 18535361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 36380182 - 36380137
Alignment:
Q  175 attttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  36380182 attttgagtcactttcataacaatctccaccttgactctaaattag 36380137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 27498986 - 27498942
Alignment:
Q  175 attttgagtcactttcacaacaatctccaccttgactctaaatta 219  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  27498986 attttgaggcactttcacaacaatctccaccttgactctaaatta 27498942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 47564519 - 47564479
Alignment:
Q  175 attttgagtcactttcacaacaatctccaccttgactctaa 215  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  47564519 attttgaggcactttcacaacaatctccaccttgactctaa 47564479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 33415977 - 33416020
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaacaa 197  Q
    ||||||| |||||||||||  |||||||||||||||||||||||    
T  33415977 cagcaaatttcaatttctccaattttgagtcactttcacaacaa 33416020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 16455067 - 16455025
Alignment:
Q  178 ttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    |||||||||||  |||||||||||||||||||||| |||||||    
T  16455067 ttgagtcacttctacaacaatctccaccttgactccaaattag 16455025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 37313562 - 37313600
Alignment:
Q  158 aaacttcaatttctcagattttgagtcactttcacaaca 196  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  37313562 aaacttcaatttctccaattttgagtcactttcacaaca 37313600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 20044778 - 20044733
Alignment:
Q  175 attttgagtcactttcacaacaatctccaccttgactctaaattag 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  20044778 attttgagtcactttcacaacaatctccaccttgactctaaattag 20044733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 1190112 - 1190154
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaaca 196  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  1190112 cagcaaacttcaatttctccaattttgagtcactttcacaaca 1190154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 16092702 - 16092746
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaacaat 198  Q
    |||||||||||||||||||  ||||||||||| ||||||||||||    
T  16092702 cagcaaacttcaatttctccaattttgagtcagtttcacaacaat 16092746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 31473108 - 31473152
Alignment:
Q  154 cagcaaacttcaatttctcagattttgagtcactttcacaacaat 198  Q
    |||||||||||||||||||  ||||| | ||||||||||||||||    
T  31473108 cagcaaacttcaatttctccaattttaaatcactttcacaacaat 31473152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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