View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13513_low_4 (Length: 326)
Name: NF13513_low_4
Description: NF13513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13513_low_4 |
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| [»] scaffold0189 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 9 - 326
Target Start/End: Complemental strand, 18287 - 17970
Alignment:
| Q |
9 |
gaaatgaaacaaaacacaaacactatcagttagctaaagaatcttaggtgtaataatgtacaaatcaaagtactcacccctcaaaacattgttcactgca |
108 |
Q |
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| T |
18287 |
gaaaagaaacaaaacacaaacactatcagttagctaaagaatcttaggtgtaataatgtacaaatcaaagtactcacccctcaaaacattattcactgca |
18188 |
T |
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| Q |
109 |
gcgacgtacaaagtcatcagtatagcttccaaaaatactatcaagacgcttcactacgatgggaatatcctctggaggtagtatatcccatatccttaaa |
208 |
Q |
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| T |
18187 |
gcgacgtacaaagtcatcagtatagcttccaaaaatactatcaagaagcttcactactatgggaatatcctctggaggtagtatatcccatatccttaaa |
18088 |
T |
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| Q |
209 |
acttgagtgaaatttgattcttttactatgtcctttgaacaaacaacaaagagaccttcaactttgtattgctttaacatctgagatgaagttccacaga |
308 |
Q |
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| T |
18087 |
acttgagtgaaatttgattcttttactatgtcctttgaacaaacaacaaagagaccttcaactttgtattgctttaacatctgagatgaagttccacaga |
17988 |
T |
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| Q |
309 |
gcaagtccacttttatcc |
326 |
Q |
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| T |
17987 |
gcaagtccacttttatcc |
17970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 36 - 326
Target Start/End: Original strand, 34605263 - 34605553
Alignment:
| Q |
36 |
agttagctaaagaatcttaggtgtaataatgtacaaatcaaagtactcacccctcaaaacattgttcactgcagcgacgtacaaagtcatcagtatagct |
135 |
Q |
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| T |
34605263 |
agttagctaaagtaacttaggtgtaataaaatacaaatcaaagtacttacccttcaaaacgttgctcactgaagcgacttataaaatcatcagtatagct |
34605362 |
T |
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| Q |
136 |
tccaaaaatactatcaagacgcttcactacgatgggaatatcctctggaggtagtatatcccatatccttaaaacttgagtgaaatttgattcttttact |
235 |
Q |
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| T |
34605363 |
ttcaaaaatactatctagacgcttcagtactttaggaatatcctccggaggcagtatatcccatatccttaaaacttgagtgaaaatcacttcttttact |
34605462 |
T |
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| Q |
236 |
atgtcctttgaacaaacaacaaagagaccttcaactttgtattgctttaacatctgagatgaagttccacagagcaagtccacttttatcc |
326 |
Q |
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| T |
34605463 |
atgtccttcgaacaaacaacaaagagaccttcaactttatattgcttaaacatctgggatgaatttccacaaagcaaatccacttttatcc |
34605553 |
T |
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