View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13513_low_5 (Length: 305)

Name: NF13513_low_5
Description: NF13513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13513_low_5
NF13513_low_5
[»] scaffold0302 (3 HSPs)
scaffold0302 (1-113)||(17720-17832)
scaffold0302 (182-297)||(17534-17649)
scaffold0302 (185-297)||(18701-18813)
[»] chr3 (42 HSPs)
chr3 (185-297)||(54540715-54540827)
chr3 (185-297)||(22776737-22776849)
chr3 (187-305)||(7268754-7268872)
chr3 (185-291)||(22775816-22775922)
chr3 (185-297)||(55191920-55192032)
chr3 (187-305)||(7267699-7267817)
chr3 (185-297)||(10457604-10457716)
chr3 (185-297)||(54539819-54539931)
chr3 (185-303)||(19985995-19986113)
chr3 (185-297)||(19984913-19985025)
chr3 (189-293)||(49398194-49398298)
chr3 (197-297)||(8456541-8456642)
chr3 (185-303)||(34940112-34940230)
chr3 (187-277)||(55191594-55191684)
chr3 (185-302)||(4271499-4271616)
chr3 (194-291)||(47615510-47615608)
chr3 (185-297)||(49216311-49216423)
chr3 (185-241)||(49220477-49220533)
chr3 (194-297)||(51037599-51037703)
chr3 (185-271)||(52839127-52839213)
chr3 (185-297)||(31645037-31645149)
chr3 (194-297)||(51038723-51038827)
chr3 (185-302)||(53614878-53614995)
chr3 (185-297)||(29931290-29931403)
chr3 (185-297)||(29980444-29980557)
chr3 (196-287)||(10583976-10584067)
chr3 (4-62)||(18009876-18009931)
chr3 (185-292)||(26722601-26722708)
chr3 (185-269)||(49401413-49401497)
chr3 (195-297)||(7758466-7758569)
chr3 (194-292)||(51347337-51347436)
chr3 (232-290)||(53897173-53897231)
chr3 (197-297)||(8875970-8876071)
chr3 (185-297)||(12700237-12700350)
chr3 (192-273)||(39843139-39843220)
chr3 (185-240)||(6171168-6171223)
chr3 (185-271)||(32829829-32829915)
chr3 (185-303)||(54986931-54987050)
chr3 (200-297)||(23770346-23770444)
chr3 (256-297)||(53616012-53616053)
chr3 (185-288)||(26723786-26723889)
chr3 (230-282)||(51470051-51470103)
[»] chr2 (31 HSPs)
chr2 (185-297)||(36449842-36449954)
chr2 (187-305)||(7898747-7898865)
chr2 (185-305)||(36450846-36450966)
chr2 (185-297)||(38840418-38840530)
chr2 (185-297)||(22587564-22587676)
chr2 (185-297)||(38839306-38839418)
chr2 (192-305)||(7899814-7899927)
chr2 (185-297)||(13570482-13570594)
chr2 (185-297)||(41879137-41879249)
chr2 (197-305)||(11257677-11257786)
chr2 (185-305)||(41878150-41878264)
chr2 (185-297)||(22848255-22848368)
chr2 (185-297)||(22587879-22587991)
chr2 (185-305)||(8534638-8534758)
chr2 (185-297)||(810706-810818)
chr2 (230-305)||(18299429-18299504)
chr2 (256-305)||(8535652-8535701)
chr2 (185-297)||(26544212-26544325)
chr2 (185-297)||(802516-802628)
chr2 (194-297)||(18797311-18797415)
chr2 (196-283)||(27553701-27553788)
chr2 (185-297)||(32739715-32739827)
chr2 (185-290)||(26545445-26545551)
chr2 (185-297)||(11258735-11258848)
chr2 (4-62)||(8972574-8972629)
chr2 (231-290)||(11938760-11938819)
chr2 (6-62)||(20440127-20440180)
chr2 (6-62)||(20445732-20445785)
chr2 (6-62)||(35780107-35780160)
chr2 (185-297)||(16446218-16446330)
chr2 (244-297)||(23869519-23869572)
[»] chr6 (17 HSPs)
chr6 (185-292)||(29473146-29473253)
chr6 (185-305)||(10784649-10784770)
chr6 (187-305)||(14822416-14822534)
chr6 (185-305)||(1829528-1829648)
chr6 (185-297)||(26574979-26575091)
chr6 (187-305)||(14823502-14823620)
chr6 (185-297)||(10785838-10785950)
chr6 (185-297)||(16704422-16704534)
chr6 (185-298)||(7316218-7316332)
chr6 (214-276)||(26574703-26574765)
chr6 (185-297)||(7314943-7315056)
chr6 (194-291)||(26717046-26717144)
chr6 (185-247)||(26949110-26949172)
chr6 (185-237)||(16703682-16703734)
chr6 (230-297)||(5658820-5658887)
chr6 (230-297)||(27437892-27437959)
chr6 (187-228)||(13345682-13345723)
[»] chr8 (35 HSPs)
chr8 (186-305)||(11287832-11287951)
chr8 (185-297)||(18978083-18978195)
chr8 (182-290)||(45112940-45113043)
chr8 (185-297)||(12353286-12353398)
chr8 (185-297)||(18488187-18488299)
chr8 (185-302)||(18979046-18979162)
chr8 (185-290)||(30570181-30570286)
chr8 (185-297)||(12351985-12352097)
chr8 (185-297)||(18970974-18971085)
chr8 (190-297)||(42982584-42982694)
chr8 (185-305)||(10007687-10007808)
chr8 (185-297)||(24122946-24123058)
chr8 (194-303)||(22220446-22220556)
chr8 (185-297)||(10006408-10006521)
chr8 (185-297)||(30568950-30569062)
chr8 (182-297)||(45114438-45114553)
chr8 (185-293)||(24123827-24123931)
chr8 (185-240)||(17844395-17844450)
chr8 (4-77)||(39889340-39889410)
chr8 (4-64)||(28977933-28977990)
chr8 (231-292)||(11282077-11282138)
chr8 (194-297)||(22221297-22221401)
chr8 (194-297)||(22227639-22227743)
chr8 (231-297)||(5514045-5514111)
chr8 (200-297)||(43661329-43661427)
chr8 (231-292)||(11283180-11283241)
chr8 (69-110)||(28977860-28977901)
chr8 (185-293)||(30335707-30335816)
chr8 (185-297)||(43661747-43661860)
chr8 (194-297)||(1824011-1824115)
chr8 (194-297)||(1858456-1858560)
chr8 (221-297)||(29968298-29968374)
chr8 (230-297)||(8388526-8388593)
chr8 (193-237)||(11288831-11288875)
chr8 (195-271)||(36249642-36249718)
[»] scaffold2034 (2 HSPs)
scaffold2034 (185-297)||(903-1015)
scaffold2034 (185-297)||(297-409)
[»] chr5 (27 HSPs)
chr5 (185-297)||(28538740-28538852)
chr5 (185-297)||(36486413-36486525)
chr5 (185-299)||(40255597-40255711)
chr5 (185-297)||(28539745-28539857)
chr5 (185-297)||(1797222-1797334)
chr5 (185-297)||(24332977-24333089)
chr5 (185-305)||(33160212-33160331)
chr5 (185-297)||(36485364-36485476)
chr5 (185-294)||(1015551-1015660)
chr5 (185-305)||(18486826-18486947)
chr5 (185-297)||(20214259-20214372)
chr5 (185-297)||(20216687-20216800)
chr5 (185-297)||(25523133-25523246)
chr5 (194-303)||(25055470-25055580)
chr5 (185-297)||(1016789-1016900)
chr5 (185-291)||(5961476-5961582)
chr5 (185-305)||(16650779-16650900)
chr5 (185-297)||(19752975-19753088)
chr5 (185-288)||(18485218-18485322)
chr5 (185-276)||(14061537-14061628)
chr5 (187-297)||(16650056-16650167)
chr5 (185-297)||(19754054-19754167)
chr5 (194-294)||(42195199-42195300)
chr5 (190-271)||(22940552-22940634)
chr5 (244-297)||(21835104-21835157)
chr5 (185-297)||(25524022-25524135)
chr5 (183-274)||(24468509-24468601)
[»] chr4 (34 HSPs)
chr4 (185-297)||(31599853-31599965)
chr4 (185-297)||(31600910-31601022)
chr4 (185-297)||(10448185-10448297)
chr4 (185-299)||(52491534-52491646)
chr4 (185-297)||(35935458-35935570)
chr4 (185-305)||(35934398-35934518)
chr4 (185-297)||(21178060-21178172)
chr4 (185-305)||(8758766-8758882)
chr4 (185-303)||(50909597-50909716)
chr4 (185-297)||(17388135-17388248)
chr4 (186-297)||(10447071-10447182)
chr4 (185-240)||(46637804-46637859)
chr4 (212-305)||(8757730-8757822)
chr4 (194-297)||(1290131-1290235)
chr4 (185-297)||(17383056-17383169)
chr4 (229-297)||(1963260-1963328)
chr4 (185-272)||(54107948-54108035)
chr4 (190-305)||(1289153-1289269)
chr4 (194-297)||(1835035-1835139)
chr4 (194-303)||(1834177-1834288)
chr4 (185-290)||(8896835-8896940)
chr4 (185-297)||(12129687-12129800)
chr4 (194-297)||(1964374-1964478)
chr4 (186-297)||(13509284-13509396)
chr4 (4-62)||(44890878-44890933)
chr4 (230-281)||(2193425-2193476)
chr4 (230-297)||(5526096-5526163)
chr4 (230-297)||(19750545-19750612)
chr4 (230-297)||(19789194-19789261)
chr4 (230-297)||(25684998-25685065)
chr4 (230-292)||(10470615-10470677)
chr4 (6-35)||(43242654-43242683)
chr4 (185-297)||(55603456-55603568)
chr4 (185-237)||(50909386-50909438)
[»] chr1 (38 HSPs)
chr1 (187-305)||(39699694-39699812)
chr1 (185-297)||(39153041-39153153)
chr1 (185-297)||(44411891-44412003)
chr1 (185-297)||(45149895-45150008)
chr1 (185-297)||(45148644-45148756)
chr1 (185-261)||(14999381-14999457)
chr1 (185-297)||(44404506-44404618)
chr1 (185-297)||(39151995-39152107)
chr1 (185-263)||(14999876-14999958)
chr1 (197-297)||(24422864-24422965)
chr1 (194-305)||(11436098-11436210)
chr1 (190-297)||(11437128-11437236)
chr1 (185-297)||(36613828-36613941)
chr1 (189-305)||(39698619-39698734)
chr1 (190-287)||(46525730-46525827)
chr1 (185-281)||(16281227-16281321)
chr1 (197-297)||(52275032-52275133)
chr1 (185-302)||(37526802-37526919)
chr1 (185-293)||(43378637-43378746)
chr1 (185-305)||(50680387-50680508)
chr1 (230-303)||(51684424-51684497)
chr1 (185-281)||(52276087-52276184)
chr1 (194-292)||(35595125-35595223)
chr1 (214-297)||(45157163-45157246)
chr1 (185-292)||(14512547-14512654)
chr1 (185-303)||(16290152-16290270)
chr1 (194-287)||(46524613-46524706)
chr1 (229-282)||(17505040-17505093)
chr1 (230-297)||(24426045-24426112)
chr1 (185-240)||(33088188-33088243)
chr1 (185-271)||(39221404-39221491)
chr1 (194-240)||(46312185-46312232)
chr1 (231-297)||(35066973-35067039)
chr1 (231-297)||(43058849-43058915)
chr1 (185-305)||(43377776-43377897)
chr1 (244-297)||(51685749-51685802)
chr1 (185-248)||(21946523-21946587)
chr1 (194-297)||(35594280-35594383)
[»] scaffold0632 (1 HSPs)
scaffold0632 (185-297)||(3233-3345)
[»] chr7 (21 HSPs)
chr7 (185-297)||(14999080-14999192)
chr7 (185-305)||(7500510-7500631)
chr7 (185-240)||(34351609-34351664)
chr7 (198-297)||(42886224-42886323)
chr7 (195-293)||(14998048-14998145)
chr7 (185-297)||(11658443-11658556)
chr7 (185-297)||(22629550-22629663)
chr7 (197-297)||(31659687-31659788)
chr7 (185-297)||(34352711-34352823)
chr7 (192-290)||(770693-770791)
chr7 (185-297)||(7501776-7501889)
chr7 (224-297)||(11662515-11662588)
chr7 (194-297)||(18371488-18371592)
chr7 (4-64)||(33131956-33132013)
chr7 (185-290)||(769484-769589)
chr7 (185-297)||(18372381-18372494)
chr7 (195-302)||(6618266-6618374)
chr7 (185-291)||(32253352-32253458)
chr7 (69-105)||(33131885-33131921)
chr7 (230-297)||(31949386-31949453)
chr7 (185-265)||(46482693-46482774)
[»] scaffold0059 (2 HSPs)
scaffold0059 (185-304)||(3732-3851)
scaffold0059 (185-299)||(4655-4769)
[»] scaffold0049 (1 HSPs)
scaffold0049 (244-299)||(7399-7454)
[»] scaffold0320 (1 HSPs)
scaffold0320 (185-305)||(19544-19665)
[»] scaffold0321 (1 HSPs)
scaffold0321 (194-297)||(18792-18896)
[»] scaffold1303 (1 HSPs)
scaffold1303 (194-303)||(1497-1607)
[»] scaffold0586 (1 HSPs)
scaffold0586 (185-237)||(6457-6509)
[»] scaffold0003 (1 HSPs)
scaffold0003 (230-297)||(49403-49470)
[»] scaffold0019 (1 HSPs)
scaffold0019 (230-303)||(60148-60221)


Alignment Details
Target: scaffold0302 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 17832 - 17720
Alignment:
Q  1 aatattcatgagtttgggtttgaatggaagaagaagaagaacctggaggagtatgaagaagaagcaccttgatgagtgattttaattggatgatttgatt 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||    
T  17832 aatattcatgagtttgggtttgaatggaagaagaagacgaacctggaggagtatgaagaagaagcatcttgatgaatgattttaatcggatgatttgatt 17733  T
Q  101 ttaaagatttcga 113  Q
    |||||||||||||    
T  17732 ttaaagatttcga 17720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 182 - 297
Target Start/End: Complemental strand, 17649 - 17534
Alignment:
Q  182 aaattaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggg 281  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||    
T  17649 aaattaattcaataattacactcgtggcatgccacgtaggcattgaccggtcaaaattggtaaaaaagatcgaaattgcaaaggggataattcttggggg 17550  T
Q  282 gccaaaattgtagttt 297  Q
    ||||||||||||||||    
T  17549 gccaaaattgtagttt 17534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 18701 - 18813
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||  |||| ||| ||| |||||| |||||||| | ||  ||||||    
T  18701 ttaattcaataattacacaagtggtgtgccacgtaggcattgaccggtcaaaattgaccaaaatgattaaagttgcaatggggctaaattttaaggggcc 18800  T
Q  285 aaaattgtagttt 297  Q
    |||||| ||||||    
T  18801 aaaattatagttt 18813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 54540715 - 54540827
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| |||||||    
T  54540715 ttaattcattaattacacacgtggcatgccacgtaggcattgaccggtcaaaattgacaaaaaggatcaaagttgcaaaggggctaaatcttagggggcc 54540814  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  54540815 aaaattgtagttt 54540827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 22776737 - 22776849
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||| ||||  ||||||||||||||||||| |||||||    
T  22776737 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgggaaaatggaccaaatatgcaaaggggctaattcttagggggcc 22776836  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  22776837 aaaattgtagttt 22776849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 187 - 305
Target Start/End: Original strand, 7268754 - 7268872
Alignment:
Q  187 aattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaa 286  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| |||||||||| ||| |||| |||| || ||||||    
T  7268754 aatttaataattacacacgtggcgtgccacgtaagcattgaccggtcaaaattgatcaaaaggattaaaattgcaatgggactaaatcttaggaggccaa 7268853  T
Q  287 aattgtagtttctatactt 305  Q
    |||||||||||||||||||    
T  7268854 aattgtagtttctatactt 7268872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 185 - 291
Target Start/End: Complemental strand, 22775922 - 22775816
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||  |||||||| ||||  |||||||||||||||||||||||||||    
T  22775922 ttaattcaataattacacacgtaacatgccacgtaggcattgaccggtcaaaattgggaaaaaggaccaaatctgcaaaggggctaattcttggggggcc 22775823  T
Q  285 aaaattg 291  Q
    |||||||    
T  22775822 aaaattg 22775816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 55191920 - 55192032
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    ||||||||||||||||||| ||||  ||||| |||| |||| |||| |||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||    
T  55191920 ttaattcaataattacacatgtggtgtgccatgtagacattaaccgatcaaaattgacaaaaatgatcaaaattgcaaaggggttaattcttgaggggcc 55192019  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  55192020 aaaattgtagttt 55192032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 187 - 305
Target Start/End: Complemental strand, 7267817 - 7267699
Alignment:
Q  187 aattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaa 286  Q
    |||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||  |||||||| ||| |||||| | |||||| |||| |||||||||    
T  7267817 aatttaataattacacacgtggcgtgccatgtatgcattgaccggtcaaaattgaccaaaaggattaaagttgcaatgaggctaaatcttagggggccaa 7267718  T
Q  287 aattgtagtttctatactt 305  Q
    ||||||||||||| |||||    
T  7267717 aattgtagtttctgtactt 7267699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 10457716 - 10457604
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||  |||||||| ||||  | ||||  | ||||||| | |||||||    
T  10457716 ttaattcaataattacacacgtggaatgccacgtaggcattgaccagtcaaaattgggaaaaaggaccaaatatacaaatagactaattcctagggggcc 10457617  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  10457616 aaaattgtagttt 10457604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 54539931 - 54539819
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||||| |||||||||||||||||||||||||| || |||||| ||||||||||  ||||||||||||| ||||||| | ||||| |||| ||||  |    
T  54539931 ttaattcattaattacacacgtggcatgccacgtatgctttgaccagtcaaaattggcaaaaaggatcaaagttgcaaatgagctaaatcttaggggatc 54539832  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  54539831 aaaattgtagttt 54539819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 185 - 303
Target Start/End: Original strand, 19985995 - 19986113
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||   ||| || ||||  |||||||||| ||| |||| | ||| |    
T  19985995 ttaatttaataattacacacgtggcatgccacgtaggcattgactggtcaaaattgaccgaaatgaccaaagatgcaaaggggttaaatcttagagggtc 19986094  T
Q  285 aaaattgtagtttctatac 303  Q
    ||||||||||||| |||||    
T  19986095 aaaattgtagtttttatac 19986113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 19985025 - 19984913
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||  ||||||| ||||  |||||||||| ||| ||||   ||| |    
T  19985025 ttaatttaataattacacatgtggcatgccacgtaggcattgactggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttaaagggtc 19984926  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  19984925 aaaattgtagttt 19984913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 49398298 - 49398194
Alignment:
Q  189 ttcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaa 288  Q
    |||| ||||||||||| |||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||||| | ||||| ||||  | ||||||||    
T  49398298 ttcagtaattacacacatggcgtgccacgtaggcattgaccggtcaacattggtaaaaaggatcaaagttgcaaatgagctaaatcttaagaggccaaaa 49398199  T
Q  289 ttgta 293  Q
    |||||    
T  49398198 ttgta 49398194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 8456642 - 8456541
Alignment:
Q  197 ttacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagt 295  Q
    ||||||||||||||||||||| |||| |||||  ||||||||||||  |||||||||||| |||||| | |||||| |||| ||||||||||||||||||    
T  8456642 ttacacacgtggcatgccacgcaggcgttgactaggtcaaaattgactaaaaggatcaaatttgcaatgaggctaaatcttagggggccaaaattgtagt 8456543  T
Q  296 tt 297  Q
    ||    
T  8456542 tt 8456541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 185 - 303
Target Start/End: Original strand, 34940112 - 34940230
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| | ||||||||||| ||||| || ||||  | |||| ||||||||| || | || ||    
T  34940112 ttaattcaataattacacatgtggcatgctacgtaggcattgatcagtcaaaattgagaaaaaagaccaaatatacaaatgggctaattattagaggacc 34940211  T
Q  285 aaaattgtagtttctatac 303  Q
    ||||||||| ||| |||||    
T  34940212 aaaattgtaatttttatac 34940230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 277
Target Start/End: Complemental strand, 55191684 - 55191594
Alignment:
Q  187 aattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttg 277  Q
    |||| |||||||||||||||||| | || | ||||| ||||| | |||||| ||||||||||||||||||||||||||||||||| |||||    
T  55191684 aatttaataattacacacgtggcgtaccgcataggctttgactgatcaaaagtgataaaaaggatcaaaattgcaaaggggctaaatcttg 55191594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 302
Target Start/End: Complemental strand, 4271616 - 4271499
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||||||||| ||||| || ||  ||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||| ||||  |  ||     
T  4271616 ttaatttaataattacacatgtggcgtgtcatatagacattgaccggtcaaaattgacaaaaaggatcaaagttgcaaatgggctaaatcttaagatgct 4271517  T
Q  285 aaaattgtagtttctata 302  Q
    ||||||||||||| ||||    
T  4271516 aaaattgtagtttttata 4271499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 291
Target Start/End: Original strand, 47615510 - 47615608
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattg 291  Q
    |||||||||||||||| |||||||||||||||||    |||||||||||  ||||||| ||||  |||||||||||||| |||| ||||||||||||||    
T  47615510 taattacacacgtggcctgccacgtaggcattgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaaattg 47615608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 49216423 - 49216311
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||||||||||||| |||||||||||| |||||| ||||||||||||   |||| |||||||  |||||| | ||||| ||||  |||| |    
T  49216423 ttaattaaataattacacacgtgacatgccacgtagacattgatcggtcaaaattggccaaaatgatcaaagatgcaaatgagctaaatcttaaggggac 49216324  T
Q  285 aaaattgtagttt 297  Q
    | |||||||||||    
T  49216323 ataattgtagttt 49216311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 49220477 - 49220533
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattga 241  Q
    |||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  49220477 ttaattaaataattacacacgtggcaagccacgtagacattgaccggtcaaaattga 49220533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 297
Target Start/End: Complemental strand, 51037703 - 51037599
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgac-cggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    ||||||||||||||||||||||  |  |  ||||| |||||||||||| ||||||||| ||  | ||||||||||||||||||| |||||| ||||||||    
T  51037703 taattacacacgtggcatgccaaatcagtgttgactcggtcaaaattgttaaaaaggaccactactgcaaaggggctaattcttagggggctaaaattgt 51037604  T
Q  293 agttt 297  Q
    |||||    
T  51037603 agttt 51037599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 52839213 - 52839127
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaa 271  Q
    ||||||||| ||||| ||||||||| | |||| ||||| ||||||||||||||||||  |||||||| ||| |||||| ||||||||    
T  52839213 ttaattcaacaattatacacgtggcgtaccacataggctttgaccggtcaaaattgaccaaaaggatgaaatttgcaatggggctaa 52839127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 31645149 - 31645037
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||| ||||||||| |||| ||| ||| | ||||||||||||||||| | ||||||| ||||  |||||| ||||||| |||| || ||      
T  31645149 ttaattaaataataacacacgtgacatgacacatagacgttgaccggtcaaaattggtcaaaaggaccaaagatgcaaatgggctaaatcttaggaggtt 31645050  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  31645049 aaaattgtagttt 31645037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 297
Target Start/End: Original strand, 51038723 - 51038827
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgac-cggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    ||||||||||||||||||||||  |  || ||||| |||||||||||| ||||||||| ||  ||||||||||||  |||||||  ||| ||||||||||    
T  51038723 taattacacacgtggcatgccaaatcagcgttgactcggtcaaaattgctaaaaaggaccactattgcaaaggggacaattcttaagggaccaaaattgt 51038822  T
Q  293 agttt 297  Q
    |||||    
T  51038823 agttt 51038827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 302
Target Start/End: Complemental strand, 53614995 - 53614878
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| |||||||||||||||| | |||||  ||||| |||| || ||||||||||| | ||||||     |||||||| ||||||||||||| |||||    
T  53614995 ttaatttaataattacacacgtgacctgccatataggcgttgatcgagtcaaaattgacataaaggactgctattgcaaatgggctaattcttg-ggggc 53614897  T
Q  284 caaaattgtagtttctata 302  Q
    |||||||||||||| ||||    
T  53614896 caaaattgtagtttttata 53614878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 29931403 - 29931290
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||||| || |||||||||||| ||||||   |||| ||||| | |||||||||||  |||||||  |  |||||||||||| ||| |||| ||||||    
T  29931403 ttaattcattatttacacacgtggaatgccatacaggcgttgactgtgtcaaaattgaccaaaaggactattattgcaaaggggttaaatcttagggggc 29931304  T
Q  284 caaaattgtagttt 297  Q
    ||||||||||||||    
T  29931303 caaaattgtagttt 29931290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 29980557 - 29980444
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||||| || |||||||||||| ||||||   |||| ||||| | |||||||||||  |||||||  |  |||||||||||| ||| |||| ||||||    
T  29980557 ttaattcattatttacacacgtggaatgccatacaggcgttgactgtgtcaaaattgaccaaaaggactattattgcaaaggggttaaatcttagggggc 29980458  T
Q  284 caaaattgtagttt 297  Q
    ||||||||||||||    
T  29980457 caaaattgtagttt 29980444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 10583976 - 10584067
Alignment:
Q  196 attacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaa 287  Q
    |||||| |||||||||||||| ||||  |||||  ||||||||||||  |||||| |||| |||||||||||||||| |||| ||||||||||    
T  10583976 attacatacgtggcatgccacttaggtgttgacttggtcaaaattgaccaaaagg-tcaatattgcaaaggggctaaatcttagggggccaaa 10584067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 18009876 - 18009931
Alignment:
Q  4 attcatgagtttgggtttgaatggaagaagaagaagaacctggaggagtatgaagaaga 62  Q
    |||||||||||||||||||||||   ||||||||||||| |||||||||||| ||||||    
T  18009876 attcatgagtttgggtttgaatg---gaagaagaagaacatggaggagtatgtagaaga 18009931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 292
Target Start/End: Complemental strand, 26722708 - 26722601
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgac-cggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | ||||||||||||||||||||||| ||||| |||||  |||||||||||   |||||| |||  |||||||||||||||| || | |||| |    
T  26722708 ttaatttagtaattacacacgtggcatgccacttaggcgttgactaggtcaaaattggctaaaagg-tcactattgcaaaggggctaaatcataggggac 26722610  T
Q  284 caaaattgt 292  Q
    |||||||||    
T  26722609 caaaattgt 26722601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 49401413 - 49401497
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggct 269  Q
    ||||||||||||||||| |  ||   ||||||||||||||||| | ||||||||||| ||||||||| |||| |||||| |||||    
T  49401413 ttaattcaataattacatatatgatgtgccacgtaggcattgatcagtcaaaattgacaaaaaggataaaaaatgcaaatgggct 49401497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 297
Target Start/End: Complemental strand, 7758569 - 7758466
Alignment:
Q  195 aattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgta 293  Q
    ||||| |||||||||||||||| || || |||||  ||||||||||||  ||||||| ||||  | |||||||| ||| |||| |||||| |||||||||    
T  7758569 aattatacacgtggcatgccacttaagcgttgactaggtcaaaattgaccaaaaggaccaaagatacaaaggggttaaatcttagggggcaaaaattgta 7758470  T
Q  294 gttt 297  Q
    ||||    
T  7758469 gttt 7758466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 51347436 - 51347337
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgac-cggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    ||||||||||||| || ||||||||| || |||||  |||||| |||||| |||| ||||||| ||||||| ||| ||| |||| ||||| |||||||||    
T  51347436 taattacacacgtagcctgccacgtatgcgttgactaggtcaacattgatcaaaatgatcaaagttgcaaacgggttaaatcttagggggtcaaaattgt 51347337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 53897231 - 53897173
Alignment:
Q  232 tcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaatt 290  Q
    ||||||||||  |||||||||||| ||||||| |||||||| ||| |||||||||||||    
T  53897231 tcaaaattgaccaaaaggatcaaagttgcaaatgggctaatacttagggggccaaaatt 53897173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 8876071 - 8875970
Alignment:
Q  197 ttacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagt 295  Q
    ||||||| ||||| |||||||||||| ||||    |||||||||||  ||||||| ||||  ||||||  |||||| |||| ||||||||||||||||||    
T  8876071 ttacacatgtggcctgccacgtaggcgttgaataagtcaaaattgactaaaaggaccaaatatgcaaattggctaaatcttagggggccaaaattgtagt 8875972  T
Q  296 tt 297  Q
    ||    
T  8875971 tt 8875970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 12700350 - 12700237
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||||||||||||| |||||||||||| ||||    |||||||||||  ||||||| ||||  ||||| | |||||| || | |||||     
T  12700350 ttaattaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaatgtggctaaatcatagggggt 12700251  T
Q  284 caaaattgtagttt 297  Q
    ||||||||||||||    
T  12700250 caaaattgtagttt 12700237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 39843220 - 39843139
Alignment:
Q  192 aataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaatt 273  Q
    ||||||||||| |||||||||||| | | || |||||| |||||||| | | |||| ||| |||||||||||||| ||||||    
T  39843220 aataattacacgcgtggcatgccatgcaagcgttgacctgtcaaaatcggtcaaaatgatgaaaattgcaaagggactaatt 39843139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 6171168 - 6171223
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattg 240  Q
    ||||||||||||||||||| ||||| ||||| |||||||||||   ||||||||||    
T  6171168 ttaattcaataattacacatgtggcgtgccaagtaggcattgattagtcaaaattg 6171223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 32829915 - 32829829
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattga-ccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaa 271  Q
    |||||||||||| ||||||| ||||||||||| |||   |||| ||||||||||||||| |||||| |||   |||||||||||||||    
T  32829915 ttaattcaataaatacacacatggcatgccacatagtggttgacccggtcaaaattgatcaaaagg-tcacttttgcaaaggggctaa 32829829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 303
Target Start/End: Original strand, 54986931 - 54987050
Alignment:
Q  185 ttaattcaataattacacacgt-ggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| |||||||| |||| | ||| |||||| |||  ||||||||||||||||||   |||| |||||||  |||||||| ||||| |||| | |||     
T  54986931 ttaattaaataattaaacacctaggcgtgccacatagaaattgaccggtcaaaattggccaaaatgatcaaagatgcaaaggagctaaatcttagagggt 54987030  T
Q  284 caaaattgtagtttctatac 303  Q
    ||||||| |||||| |||||    
T  54987031 caaaattatagtttttatac 54987050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 297
Target Start/End: Original strand, 23770346 - 23770444
Alignment:
Q  200 cacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    ||||||||||||||||| || || |||||  ||||||| ||||  |||||||  |||  |||||||||| ||| |||| |||||| |||||||||||||    
T  23770346 cacacgtggcatgccacatatgcgttgacttggtcaaagttgaccaaaaggactaaagatgcaaaggggttaaatcttagggggctaaaattgtagttt 23770444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 53616012 - 53616053
Alignment:
Q  256 attgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    |||||||||| |||||||||||||||||  ||||||||||||    
T  53616012 attgcaaaggagctaattcttggggggctgaaattgtagttt 53616053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 288
Target Start/End: Original strand, 26723786 - 26723889
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgac-cggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||||||| |||||||||||| || || |||||  ||||||||||||  |||||| |||  |||||||||||||||| || | |||| |    
T  26723786 ttaatttagtaattacacatgtggcatgccacttaagcgttgactaggtcaaaattgactaaaagg-tcactattgcaaaggggctaaatcataggggac 26723884  T
Q  284 caaaa 288  Q
    |||||    
T  26723885 caaaa 26723889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 51470103 - 51470051
Alignment:
Q  230 ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttgggggg 282  Q
    ||||||||||||| ||||||| |||| |||||| |||||||| |||| |||||    
T  51470103 ggtcaaaattgatcaaaaggaccaaagttgcaatggggctaaatcttaggggg 51470051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 36449954 - 36449842
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| |    
T  36449954 ttaattcaataattacacacatggcatgccacgtaggcattgaccggtcaaaattggtcaaaaggatcaaaattgcaaagggcctaattcttgggggggc 36449855  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  36449854 aaaattgtagttt 36449842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 187 - 305
Target Start/End: Complemental strand, 7898865 - 7898747
Alignment:
Q  187 aattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaa 286  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||| |||||||||| |||||||| |||| |||||||||    
T  7898865 aatttaataattacacacgtggcatgccacgtaagcattgactggtcaaaattgatcaaaaggattaaaattgcaatggggctaaatcttagggggccaa 7898766  T
Q  287 aattgtagtttctatactt 305  Q
    |||||||||||||||||||    
T  7898765 aattgtagtttctatactt 7898747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 305
Target Start/End: Original strand, 36450846 - 36450966
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    ||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||   |||||||||||||||||||||| ||||||||||||||||||    
T  36450846 ttaattcaataattacatacgtggtatgccacgtaggcattgaccagtcaaaattggccaaaaggatcaaaattgcaaaggagctaattcttggggggcc 36450945  T
Q  285 aaaattgtagtttctatactt 305  Q
     |||||||||||||| |||||    
T  36450946 gaaattgtagtttctgtactt 36450966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 38840418 - 38840530
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| |||| ||||||     
T  38840418 ttaattaaataattacacacgtggcacgccgcgtaggcattgaccggtcaaaattgatcaaaaggattaaaattgcaatggggctaaatcttagggggct 38840517  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  38840518 aaaattgtagttt 38840530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 22587676 - 22587564
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||||||||||||||||||||| |||||||||||| |||||||||||   ||||||| ||||  ||||||| |||||| |||| |||||||    
T  22587676 ttaattaaataattacacacgtggcatgccatgtaggcattgactggtcaaaattggccaaaaggaccaaagatgcaaagaggctaaatcttagggggcc 22587577  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  22587576 aaaattgtagttt 22587564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 38839418 - 38839306
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||||||||| |||||| |||||||| |||||||| ||||||||||||  |||| ||| |||||||||| |||||||| |||| |||||||    
T  38839418 ttaattaaataattacacaagtggcacgccacgtaagcattgacgggtcaaaattgaccaaaatgattaaaattgcaatggggctaaatcttagggggcc 38839319  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  38839318 aaaattgtagttt 38839306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 192 - 305
Target Start/End: Original strand, 7899814 - 7899927
Alignment:
Q  192 aataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattg 291  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||  |||| ||| ||| || ||| |||||||| |||| |||||| |||||||    
T  7899814 aataattacacacgtggcgtgccacgtatgcattgaccggtcaaaattgaccaaaaagattaaagttacaatggggctaaatcttagggggctaaaattg 7899913  T
Q  292 tagtttctatactt 305  Q
    |||||||| |||||    
T  7899914 tagtttctgtactt 7899927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 13570482 - 13570594
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| ||||||||| |||||||| |||||| |||| |||||||| |||||||||  ||||||||||||| ||| |||||| |||||||||||||| ||    
T  13570482 ttaattaaataattacgcacgtggcgtgccacataggaattgaccgctcaaaattggcaaaaaggatcaaagttgtaaagggactaattcttgggggacc 13570581  T
Q  285 aaaattgtagttt 297  Q
    |||||| ||||||    
T  13570582 aaaattatagttt 13570594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 41879137 - 41879249
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||| ||| |||||||||| || ||||| | || |||||      
T  41879137 ttaattaaataattacacacgtggcacgccacgtaggcattgactggtcaaaattgatcaaaatgattaaaattgcaatggtgctaaattttagggggtt 41879236  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  41879237 aaaattgtagttt 41879249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 305
Target Start/End: Complemental strand, 11257786 - 11257677
Alignment:
Q  197 ttacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagt 295  Q
    ||||||||||||||||||||| |||| |||||   |||||||||||| |||||||||||| |||||| |||||||| |||| || |||||||||||||||    
T  11257786 ttacacacgtggcatgccacgcaggcgttgactatgtcaaaattgatcaaaaggatcaaatttgcaatggggctaaatcttaggaggccaaaattgtagt 11257687  T
Q  296 ttctatactt 305  Q
    || |||||||    
T  11257686 ttttatactt 11257677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 305
Target Start/End: Complemental strand, 41878264 - 41878150
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| ||||||||||||||||     |||||||| ||||||||||||||||||||  |||| ||| |||||||||| |||||||| ||||  ||||||    
T  41878264 ttaattaaataattacacacgtg-----ccacgtag-cattgaccggtcaaaattgaccaaaaagattaaaattgcaatggggctaaatcttaaggggcc 41878171  T
Q  285 aaaattgtagtttctatactt 305  Q
    ||||||||||||||| |||||    
T  41878170 aaaattgtagtttctgtactt 41878150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 22848368 - 22848255
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||||||||||||| |||||||||||| ||||    |||||||||||| ||||||| ||||  |||||||||||||| |||| ||| ||    
T  22848368 ttaattaattaattacacacgtggcttgccacgtaggcgttgaataagtcaaaattgatcaaaaggaccaaagctgcaaaggggctaaatcttagggagc 22848269  T
Q  284 caaaattgtagttt 297  Q
    ||||||||||||||    
T  22848268 caaaattgtagttt 22848255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 22587879 - 22587991
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| ||||| ||||||||||||||||||| ||| | ||||| |||| ||||||   ||||||| ||||  |||||||||||||| ||||  ||||||    
T  22587879 ttaattaaataaatacacacgtggcatgccacatagacgttgactggtcgaaattggccaaaaggaccaaagatgcaaaggggctaaatcttaaggggcc 22587978  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  22587979 aaaattgtagttt 22587991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 305
Target Start/End: Complemental strand, 8534758 - 8534638
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||||||||||||||||||| || |||||  ||||| ||||||  |||||||||||   ||||||  |  ||||||||| ||||||||||| |||| |    
T  8534758 ttaattcaataattacacacgtagcctgccatataggcgttgaccaagtcaaaattgacctaaaggactactattgcaaagaggctaattctt-ggggac 8534660  T
Q  284 caaaattgtagtttctatactt 305  Q
    ||||||||||||||||||||||    
T  8534659 caaaattgtagtttctatactt 8534638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 810706 - 810818
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| ||||||||||||| || |||||||| |||| |||||| | |||||||||||  |||||| ||||  ||||||||||  || |||| | ||| |    
T  810706 ttaatttaataattacacacatgacatgccacctaggtattgactgctcaaaattgatctaaaggaccaaatatgcaaaggggtaaaatcttagagggtc 810805  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  810806 aaaattgtagttt 810818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 18299504 - 18299429
Alignment:
Q  230 ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagtttctatactt 305  Q
    ||||||||||||  ||||||||||||  |||||| ||||||| || | |||||||||||||||||||| |||||||    
T  18299504 ggtcaaaattgaccaaaaggatcaaagatgcaaaagggctaaatcatagggggccaaaattgtagtttttatactt 18299429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 8535652 - 8535701
Alignment:
Q  256 attgcaaaggggctaattcttggggggccaaaattgtagtttctatactt 305  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| |||||    
T  8535652 attgcaaaggggctaattcttagggggtcaaaattgtagtttctctactt 8535701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 26544325 - 26544212
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||||| || ||||||||| |||||||||| || || |||||  ||||||||||||| ||||||| ||||  |||||||| ||||| |||| || |||    
T  26544325 ttaattcattatttacacacgcggcatgccacatatgcgttgacttggtcaaaattgatcaaaaggaccaaatatgcaaaggtgctaaatcttaggaggc 26544226  T
Q  284 caaaattgtagttt 297  Q
     |||| ||||||||    
T  26544225 taaaactgtagttt 26544212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 802516 - 802628
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| ||||||||||||| || |||||||| |||| |||||| | ||||||||||   |||||| ||||  ||||||||||  || |||| | ||| |    
T  802516 ttaatttaataattacacacatgacatgccacctaggtattgactgctcaaaattgacctaaaggaccaaatatgcaaaggggtaaaatcttagagggtc 802615  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  802616 aaaattgtagttt 802628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 297
Target Start/End: Complemental strand, 18797415 - 18797311
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    ||||||||||||||||||||||  || || ||||||  ||||||||||   ||||||| ||||  |||||||||||||| | || ||||| |||||||||    
T  18797415 taattacacacgtggcatgccaaataagcgttgaccaagtcaaaattggctaaaaggaccaaagatgcaaaggggctaaattttagggggtcaaaattgt 18797316  T
Q  293 agttt 297  Q
    |||||    
T  18797315 agttt 18797311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 283
Target Start/End: Original strand, 27553701 - 27553788
Alignment:
Q  196 attacacacgtggcatgccacgtaggcattgac-cggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| |||||||||||||| ||||| ||||| |||||||||||||  |||||| || | |||||||||||||||| |||| ||||||    
T  27553701 attacatacgtggcatgccacttaggcgttgactcggtcaaaattgaccaaaagg-tcgatattgcaaaggggctaaatcttagggggc 27553788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 32739827 - 32739715
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    ||||||||||||||||||||||||  ||| | |||||| |||||||||||||||||   ||| ||| ||||  || |||  | |||| ||||  ||||||    
T  32739827 ttaattcaataattacacacgtggtgtgcgatgtaggcgttgaccggtcaaaattggccaaatggaccaaagatggaaaatgactaaatcttaaggggcc 32739728  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  32739727 aaaattgtagttt 32739715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 26545445 - 26545551
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||||| || |||||||||||||||||||| || || ||||   ||||||||||||| |||| || ||||  |||||||||||||| |||| | |||     
T  26545445 ttaattcattatttacacacgtggcatgccacatatgcgttgatttggtcaaaattgatcaaaatgaccaaagatgcaaaggggctaaatcttagagggt 26545544  T
Q  284 caaaatt 290  Q
    |||||||    
T  26545545 caaaatt 26545551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 11258735 - 11258848
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||||| || || ||| |||||||||||| | | || |||||  ||||||||||||  ||||||||||||  ||||| |||||||| |||| |||| |    
T  11258735 ttaattcattatttgcacgcgtggcatgccatgcaagcgttgactaggtcaaaattgaccaaaaggatcaaatctgcaatggggctaaatcttaggggac 11258834  T
Q  284 caaaattgtagttt 297  Q
     |||||||||||||    
T  11258835 taaaattgtagttt 11258848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 8972629 - 8972574
Alignment:
Q  4 attcatgagtttgggtttgaatggaagaagaagaagaacctggaggagtatgaagaaga 62  Q
    ||||||||||||||||||||||| |||||||   ||||| |||||||||||| ||||||    
T  8972629 attcatgagtttgggtttgaatgaaagaaga---agaacatggaggagtatgtagaaga 8972574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 11938760 - 11938819
Alignment:
Q  231 gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaatt 290  Q
    ||||||||||  ||||| ||||||||||||||| | |||||||||| ||||| |||||||    
T  11938760 gtcaaaattggcaaaaatgatcaaaattgcaaaagagctaattcttaggggggcaaaatt 11938819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 20440127 - 20440180
Alignment:
Q  6 tcatgagtttgggtttgaatggaagaagaagaagaacctggaggagtatgaagaaga 62  Q
    |||||| ||||||||||||||   ||||||||||||| |||||||||||| ||||||    
T  20440127 tcatgaatttgggtttgaatg---gaagaagaagaacatggaggagtatgtagaaga 20440180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 20445732 - 20445785
Alignment:
Q  6 tcatgagtttgggtttgaatggaagaagaagaagaacctggaggagtatgaagaaga 62  Q
    |||||| ||||||||||||||   ||||||||||||| |||||||||||| ||||||    
T  20445732 tcatgaatttgggtttgaatg---gaagaagaagaacatggaggagtatgtagaaga 20445785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 35780160 - 35780107
Alignment:
Q  6 tcatgagtttgggtttgaatggaagaagaagaagaacctggaggagtatgaagaaga 62  Q
    |||||| ||||||||||||||||||||||   ||||| |||||||||||| ||||||    
T  35780160 tcatgaatttgggtttgaatggaagaaga---agaacatggaggagtatgtagaaga 35780107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 16446330 - 16446218
Alignment:
Q  185 ttaattcaataa-ttacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||||||||| ||||||||||||| |||||  |||||||||||  || ||||||||   ||||||  |  |||||||| ||| ||||||||||||       
T  16446330 ttaattcaataaattacacacgtggc-tgccatataggcattgacgagttaaaattgaactaaaggactactattgcaaatgggttaattcttggggtat 16446232  T
Q  284 caaaattgtagttt 297  Q
    ||||||||||||||    
T  16446231 caaaattgtagttt 16446218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 23869519 - 23869572
Alignment:
Q  244 aaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    ||||||||||||  |||||||||||||| |||| ||| || |||||||||||||    
T  23869519 aaaaggatcaaagatgcaaaggggctaaatcttagggagctaaaattgtagttt 23869572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 185 - 292
Target Start/End: Complemental strand, 29473253 - 29473146
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  29473253 ttaattcaataattacacatgtggcatgccacgtaggcattgaccggtaaaaattgacaaaaaggatcaaaattgcaaaggggccaattcttggagggcc 29473154  T
Q  285 aaaattgt 292  Q
    ||||||||    
T  29473153 aaaattgt 29473146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 185 - 305
Target Start/End: Complemental strand, 10784770 - 10784649
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaa-ggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| ||||||||||||| |||| |||| |||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||    
T  10784770 ttaatttaataattacacacatggcgtgccccgtaggcattaaccggtcaaaattgataaaaaaggatcaaagttgcaaaggggctaaatctttgggggc 10784671  T
Q  284 caaaattgtagtttctatactt 305  Q
    |||||||||||||| |||||||    
T  10784670 caaaattgtagtttttatactt 10784649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 187 - 305
Target Start/End: Complemental strand, 14822534 - 14822416
Alignment:
Q  187 aattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaa 286  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||| ||| |||||| | | |||| |||| |||||||||    
T  14822534 aatttaataattacacacgtggcgtgccacgtaagcattgaccggtcaaaatagattaaaaggattaaagttgcaatgagactaaatcttagggggccaa 14822435  T
Q  287 aattgtagtttctatactt 305  Q
    |||||||||||||||||||    
T  14822434 aattgtagtttctatactt 14822416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 185 - 305
Target Start/End: Original strand, 1829528 - 1829648
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| || ||||||||||||||  |||||||||||||||||||||||||||||||  |||| || ||||  |||||||||||||| |||| |||||||    
T  1829528 ttaatttaacaattacacacgtggtgtgccacgtaggcattgaccggtcaaaattgaccaaaatgaccaaagatgcaaaggggctaaatcttagggggcc 1829627  T
Q  285 aaaattgtagtttctatactt 305  Q
    ||||||||||||| |||||||    
T  1829628 aaaattgtagtttttatactt 1829648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 26574979 - 26575091
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||||| ||||||| || |||||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||| | ||| |||| |||||||    
T  26574979 ttaattcattaattacgcatgtggcatgccacgtagacattgaccggtcaaaattggcaaaaaggatcaaagttgcaaaggagttaaatcttagggggcc 26575078  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  26575079 aaaattgtagttt 26575091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 187 - 305
Target Start/End: Original strand, 14823502 - 14823620
Alignment:
Q  187 aattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaa 286  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||  ||||| || ||  |||||| ||  |||| |||| |||||||||    
T  14823502 aatttaataattacacacgtggcgtgccacgtaggcattgaccggtcaaaattgaccaaaagaattaaggttgcaacggttctaaatcttagggggccaa 14823601  T
Q  287 aattgtagtttctatactt 305  Q
    ||||||||||||| |||||    
T  14823602 aattgtagtttctgtactt 14823620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 10785838 - 10785950
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||||||||||||||| ||||| ||| ||||||||  |||||||||| |||||||||||||| ||||||||||||||| ||||  ||||      
T  10785838 ttaatttaataattacacacgtggcgtgccatgtatgcattgactagtcaaaattggtaaaaaggatcaaagttgcaaaggggctaaatcttaaggggtt 10785937  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  10785938 aaaattgtagttt 10785950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 16704422 - 16704534
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||||| |||||||| ||||||||| |||||||||||||||||  |||||||||| ||||||||||| | |||||||| |||||| ||||   ||  |    
T  16704422 ttaattcattaattacatacgtggcataccacgtaggcattgaccaatcaaaattgacaaaaaggatcatagttgcaaagaggctaaatcttaaaggatc 16704521  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  16704522 aaaattgtagttt 16704534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 298
Target Start/End: Original strand, 7316218 - 7316332
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||||||||||||| |||||||||||| ||||    |||||||||||  ||||||| || |  |||||||||||||| ||||  |||||    
T  7316218 ttaattaattaattacacacgtggcttgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccatagatgcaaaggggctaaatcttaaggggc 7316317  T
Q  284 caaaattgtagtttc 298  Q
    ||||||||| |||||    
T  7316318 caaaattgtggtttc 7316332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 26574765 - 26574703
Alignment:
Q  214 cacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattctt 276  Q
    |||||||||||| | ||||||||||||| ||||| ||||||| ||||||||||||||| ||||    
T  26574765 cacgtaggcattaatcggtcaaaattgacaaaaaagatcaaagttgcaaaggggctaaatctt 26574703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 7315056 - 7314943
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||||||||||||| |||||||||||| ||||    |||||||||||  |||| || ||||  |||||||||||||| |||| |||||     
T  7315056 ttaattaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaatgaccaaagatgcaaaggggctaaatcttagggggt 7314957  T
Q  284 caaaattgtagttt 297  Q
    ||||||||| ||||    
T  7314956 caaaattgttgttt 7314943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 291
Target Start/End: Original strand, 26717046 - 26717144
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattg 291  Q
    |||||||| | |||||||||||  || ||||||||  ||||||||||||| |||||||||||| ||||||| | ||||| ||||  |||| ||||||||    
T  26717046 taattacataggtggcatgccaattaagcattgacttggtcaaaattgatcaaaaggatcaaagttgcaaaagagctaaatcttaaggggtcaaaattg 26717144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 26949110 - 26949172
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaa 247  Q
    |||||| |||||||||||| ||||| ||||| | |||||||||| ||||||||||||| ||||    
T  26949110 ttaatttaataattacacatgtggcgtgccatgaaggcattgactggtcaaaattgatcaaaa 26949172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 16703734 - 16703682
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaa 237  Q
    |||||||| ||||||||||||||| |||||||||| | |||||||||| ||||    
T  16703734 ttaattcattaattacacacgtggaatgccacgtaagtattgaccggttaaaa 16703682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 297
Target Start/End: Complemental strand, 5658887 - 5658820
Alignment:
Q  230 ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    ||||||||||||  |||||||||||| ||||||| ||||||| ||||  |||  ||||||||||||||    
T  5658887 ggtcaaaattgaccaaaaggatcaaagttgcaaatgggctaaatcttaagggatcaaaattgtagttt 5658820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 297
Target Start/End: Complemental strand, 27437959 - 27437892
Alignment:
Q  230 ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    |||||||||||   ||||||| |||| ||||||||| ||||| |||| ||||| ||||||||||||||    
T  27437959 ggtcaaaattggccaaaaggaccaaagttgcaaaggagctaaatcttagggggtcaaaattgtagttt 27437892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 13345682 - 13345723
Alignment:
Q  187 aattcaataattacacacgtggcatgccacgtaggcattgac 228  Q
    ||||||||||||||||| |||||||||||| || ||||||||    
T  13345682 aattcaataattacacatgtggcatgccacatatgcattgac 13345723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 186 - 305
Target Start/End: Complemental strand, 11287951 - 11287832
Alignment:
Q  186 taattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcca 285  Q
    |||||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||||| ||||||||||||||||| | |||||||| ||||||||    
T  11287951 taattcaataattacacatgtggcatgccgcataggcgttgaccggtcaaaattgataaaaatgatcaaaattgcaaaggagttaattcttagggggcca 11287852  T
Q  286 aaattgtagtttctatactt 305  Q
    |||||||||||||| |||||    
T  11287851 aaattgtagtttctgtactt 11287832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 18978195 - 18978083
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||||| ||||||||| ||||||||||||||||||| ||||||||||  ||||||||||||| ||||||||||||||| ||||  ||||||    
T  18978195 ttaatttaataattagacacgtggcgtgccacgtaggcattgacccgtcaaaattggaaaaaaggatcaaagttgcaaaggggctaaatcttaaggggcc 18978096  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  18978095 aaaattgtagttt 18978083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 182 - 290
Target Start/End: Complemental strand, 45113043 - 45112940
Alignment:
Q  182 aaattaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggg 281  Q
    ||||||||||||||||||||||||||     ||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  45113043 aaattaattcaataattacacacgtg-----ccacgtaggtattgaccagtcaaaattgataaaaaagatcaaaattgcaaaggggctaattcttagggg 45112949  T
Q  282 gccaaaatt 290  Q
     ||||||||    
T  45112948 accaaaatt 45112940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 12353286 - 12353398
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| ||||||||||||||||||| |||| ||| |||||||||||||||||||||  ||||| || |||||||||| |||||||| |||| |||||||    
T  12353286 ttaattaaataattacacacgtggcacgccatgtaagcattgaccggtcaaaattgaccaaaagaattaaaattgcaatggggctaaatcttagggggcc 12353385  T
Q  285 aaaattgtagttt 297  Q
    |||||| ||||||    
T  12353386 aaaattatagttt 12353398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 18488187 - 18488299
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||||||||||||||||  ||||||||||||||||||||||| |||||||| || | ||||||| ||||  |||||||||| ||  |||| | |||||    
T  18488187 ttaattcaataattacacatttggcatgccacgtaggcattgactggtcaaaactggtcaaaaggaccaaagatgcaaaggggttatatcttagagggcc 18488286  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  18488287 aaaattgtagttt 18488299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 185 - 302
Target Start/End: Original strand, 18979046 - 18979162
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| ||||||||||||| ||||| | || ||||||||||||| ||||||||||  ||||||||||||| ||||||| ||||||| || |  ||||||    
T  18979046 ttaatttaataattacacacatggca-gtcatgtaggcattgacctgtcaaaattggcaaaaaggatcaaagttgcaaatgggctaaatcataaggggcc 18979144  T
Q  285 aaaattgtagtttctata 302  Q
    ||||||||||||| ||||    
T  18979145 aaaattgtagtttttata 18979162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 30570181 - 30570286
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||||||||||||||| |||||||||| ||||||| |||||||||||   ||||||| ||||  |||||| ||||||| |||| |||||||    
T  30570181 ttaattaaataattacacacgtggcgtgccacgtagacattgactggtcaaaattggccaaaaggaccaaagatgcaaaagggctaaatcttagggggcc 30570280  T
Q  285 aaaatt 290  Q
    ||||||    
T  30570281 aaaatt 30570286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 12352097 - 12351985
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||||||||||||| || ||||| || ||||||||||||||||||||   |||||| | |||||||||| | |||||| |||| ||||| |    
T  12352097 ttaattaaataattacacacgtgacacgccacatatgcattgaccggtcaaaattgtccaaaagggttaaaattgcaatgaggctaaatcttagggggtc 12351998  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  12351997 aaaattgtagttt 12351985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 18971085 - 18970974
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| ||||||||||||| ||||| | || ||||||||||||||||||||||||  |||||||| |||| ||||||||||| ||| ||||  |||| |    
T  18971085 ttaatttaataattacacacatggca-gtcatgtaggcattgaccggtcaaaattggcaaaaaggaccaaagttgcaaaggggttaaatcttcaggggtc 18970987  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  18970986 aaaattgtagttt 18970974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 297
Target Start/End: Original strand, 42982584 - 42982694
Alignment:
Q  190 tcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattg---ataaaaaggatcaaaattgcaaaggggctaattcttggggggccaa 286  Q
    ||||||||||||||||| || | |||| ||||| |||||||||||||||||   | ||||| ||||||||||| ||| ||||||||||||| |||| |||    
T  42982584 tcaataattacacacgtagcgtaccacataggctttgaccggtcaaaattggcaaaaaaaatgatcaaaattgtaaatgggctaattcttgaggggtcaa 42982683  T
Q  287 aattgtagttt 297  Q
    |||||||||||    
T  42982684 aattgtagttt 42982694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 305
Target Start/End: Original strand, 10007687 - 10007808
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||||||||||||| |||||||||||| ||||    |||||||||||  ||||||| ||||  |||||||||||||| |||| |||| |    
T  10007687 ttaattaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgacgaaaaggaccaaagatgcaaaggggctaaatcttaggggac 10007786  T
Q  284 caaaattgtagtttctatactt 305  Q
    ||||||||| ||||||||||||    
T  10007787 caaaattgtggtttctatactt 10007808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 24123058 - 24122946
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| ||||||||||||| || | |||||||||||||||||||||||||||||||  ||||||| ||||  |||||||  ||||| |||| |||| |     
T  24123058 ttaatttaataattacacacatgtcgtgccacgtaggcattgaccggtcaaaattgaccaaaaggaccaaagatgcaaagaagctaaatcttaggggact 24122959  T
Q  285 aaaattgtagttt 297  Q
    |||||| ||||||    
T  24122958 aaaattatagttt 24122946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 303
Target Start/End: Complemental strand, 22220556 - 22220446
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgaccgg-tcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    ||||||||||||||||||||||  |  ||||||||  | ||||||||||| ||||||| ||||  |||||| ||||||| |||| |||||||||||||||    
T  22220556 taattacacacgtggcatgccaaatcagcattgacttgctcaaaattgatcaaaaggaccaaagatgcaaatgggctaaatcttagggggccaaaattgt 22220457  T
Q  293 agtttctatac 303  Q
    ||||| |||||    
T  22220456 agtttttatac 22220446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 10006521 - 10006408
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||||||||||||| |||||||||||| ||||    |||||||||||  ||||||| ||||  |||||||||||||| |||| ||||||    
T  10006521 ttaattaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggc 10006422  T
Q  284 caaaattgtagttt 297  Q
    ||||||||| ||||    
T  10006421 caaaattgttgttt 10006408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 30569062 - 30568950
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||||| ||||||||| |||||||||| ||||||| ||||| |||||   ||||||| ||||  |||||||||||||| |||| ||||  |    
T  30569062 ttaattaaataattatacacgtggcgtgccacgtagacattgactggtcacaattggccaaaaggaccaaagatgcaaaggggctaaatcttaggggatc 30568963  T
Q  285 aaaattgtagttt 297  Q
    |||||| ||||||    
T  30568962 aaaattatagttt 30568950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 297
Target Start/End: Original strand, 45114438 - 45114553
Alignment:
Q  182 aaattaattc-aataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttgggg 280  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||| |  |||| ||| ||| |||||| | || ||| ||||  |     
T  45114438 aaattaattccaataattacacacgtggtgtgccacgtaggcattgaccggtcaaaattaaccaaaatgattaaagttgcaatgaggttaaatctt-aga 45114536  T
Q  281 ggccaaaattgtagttt 297  Q
    |||||||||||||||||    
T  45114537 ggccaaaattgtagttt 45114553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 24123827 - 24123931
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||||||||||||||| |||||||    |||| |||||||||||||||  ||||||| ||||  |||||||||||||| |||| || |||     
T  24123827 ttaatttaataattacacacgtggcgtgccacg----cattaaccggtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttaggaggct 24123922  T
Q  285 aaaattgta 293  Q
    |||||||||    
T  24123923 aaaattgta 24123931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 17844450 - 17844395
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattg 240  Q
    ||||||||||||||||||||||| | ||||| |||||||||||||| |||||||||    
T  17844450 ttaattcaataattacacacgtgacgtgccatgtaggcattgaccgatcaaaattg 17844395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 39889340 - 39889410
Alignment:
Q  4 attcatgagtttgggtttgaatggaagaagaagaagaacctggaggagtatgaagaagaagcaccttgatgagt 77  Q
    |||||||||||||||||||||||   |||||||||||| || ||||||||||||||||||| | ||||| ||||    
T  39889340 attcatgagtttgggtttgaatg---gaagaagaagaatcttgaggagtatgaagaagaagaatcttgaggagt 39889410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 28977990 - 28977933
Alignment:
Q  4 attcatgagtttgggtttgaatggaagaagaagaagaacctggaggagtatgaagaagaag 64  Q
    |||||||||||||||||||||||||||||||   |||| || |||||||||||||||||||    
T  28977990 attcatgagtttgggtttgaatggaagaaga---agaatcttgaggagtatgaagaagaag 28977933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 11282138 - 11282077
Alignment:
Q  231 gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    |||||||||||| |||| ||||||||||||||||||| ||| |||| ||||| |||||||||    
T  11282138 gtcaaaattgatcaaaaagatcaaaattgcaaaggggttaaatcttagggggtcaaaattgt 11282077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 297
Target Start/End: Original strand, 22221297 - 22221401
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    |||||||||||||||||| |||  || || ||||||  ||||||||||   ||||||||||||  || ||||||||||| |||| ||||| |||||||||    
T  22221297 taattacacacgtggcataccaaataagcgttgaccaagtcaaaattggctaaaaggatcaaagatgtaaaggggctaaatcttagggggtcaaaattgt 22221396  T
Q  293 agttt 297  Q
    |||||    
T  22221397 agttt 22221401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 297
Target Start/End: Original strand, 22227639 - 22227743
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    |||||||||||||||||| |||  || || ||||||  ||||||||||   ||||||||||||  || ||||||||||| |||| ||||| |||||||||    
T  22227639 taattacacacgtggcataccaaataagcgttgaccaagtcaaaattggctaaaaggatcaaagatgtaaaggggctaaatcttagggggtcaaaattgt 22227738  T
Q  293 agttt 297  Q
    |||||    
T  22227739 agttt 22227743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 5514111 - 5514045
Alignment:
Q  231 gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    |||||||||||| ||||||| ||||  |||||||||||||| | || ||||| ||||||||||||||    
T  5514111 gtcaaaattgatcaaaaggaccaaagatgcaaaggggctaaattttaggggggcaaaattgtagttt 5514045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 297
Target Start/End: Complemental strand, 43661427 - 43661329
Alignment:
Q  200 cacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    ||||||||||||||||| || || |||||  ||||||| ||||  ||||| | ||||  |||||||||||||| |||| ||||||||||||| ||||||    
T  43661427 cacacgtggcatgccacatatgcgttgacttggtcaaagttgaccaaaagaaccaaagatgcaaaggggctaaatcttagggggccaaaattatagttt 43661329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 11283180 - 11283241
Alignment:
Q  231 gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    |||||||||||  |||| ||||||||||||||||||||||| | || |||| ||||||||||    
T  11283180 gtcaaaattgactaaaatgatcaaaattgcaaaggggctaaattttaggggaccaaaattgt 11283241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 28977901 - 28977860
Alignment:
Q  69 ttgatgagtgattttaattggatgatttgattttaaagattt 110  Q
    ||||||| ||||||||||||||||||||||||||||| ||||    
T  28977901 ttgatgaatgattttaattggatgatttgattttaaaaattt 28977860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 293
Target Start/End: Complemental strand, 30335816 - 30335707
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||||| || ||||||| ||||||||||||  | || |||||  ||||||||||||  ||||||| ||||  |||||||||||||| |||| |||||     
T  30335816 ttaattcattatttacacatgtggcatgccacacatgcgttgacttggtcaaaattgaacaaaaggaccaaagatgcaaaggggctaaatcttagggggt 30335717  T
Q  284 caaaattgta 293  Q
     |||||||||    
T  30335716 taaaattgta 30335707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 43661747 - 43661860
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||||| || ||||||| ||||||||||||  | || |||||  ||||||||||||| ||||||| ||||  |||||  |||| || |||| ||||||    
T  43661747 ttaattcattatttacacatgtggcatgccacacatgcgttgacttggtcaaaattgatcaaaaggaccaaagatgcaattgggcgaaatcttagggggc 43661846  T
Q  284 caaaattgtagttt 297  Q
    ||||||| ||||||    
T  43661847 caaaattttagttt 43661860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 297
Target Start/End: Original strand, 1824011 - 1824115
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    |||||||||| ||||| | |||||||||| ||||    |||||||||||  ||||||| ||||  ||||||  |||||| |||| |||||||||||||||    
T  1824011 taattacacatgtggcctaccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaaaatggctaaatcttagggggccaaaattgt 1824110  T
Q  293 agttt 297  Q
    |||||    
T  1824111 agttt 1824115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 297
Target Start/End: Original strand, 1858456 - 1858560
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    |||||||||| ||||| | |||||||||| ||||    |||||||||||  ||||||| ||||  ||||||  |||||| |||| |||||||||||||||    
T  1858456 taattacacatgtggcctaccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaaaatggctaaatcttagggggccaaaattgt 1858555  T
Q  293 agttt 297  Q
    |||||    
T  1858556 agttt 1858560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 29968298 - 29968374
Alignment:
Q  221 gcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    ||||||||||||||||||||   |||| ||| ||| |||||| |||||||| |||| |||| ||| |||||||||||    
T  29968298 gcattgaccggtcaaaattggccaaaatgattaaagttgcaatggggctaaatcttaggggaccagaattgtagttt 29968374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 297
Target Start/End: Complemental strand, 8388593 - 8388526
Alignment:
Q  230 ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    |||||||||||   ||||||| |||||  ||||||||||||| |||| ||||||||||||| ||||||    
T  8388593 ggtcaaaattgggcaaaaggaccaaaaacgcaaaggggctaaatcttagggggccaaaattatagttt 8388526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 11288831 - 11288875
Alignment:
Q  193 ataattacacacgtggcatgccacgtaggcattgaccggtcaaaa 237  Q
    ||||||||||||||| | |||||||||  ||||||||||||||||    
T  11288831 ataattacacacgtgacgtgccacgtaaacattgaccggtcaaaa 11288875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 36249718 - 36249642
Alignment:
Q  195 aattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaa 271  Q
    ||||| ||| ||||||||||||  | |||||||| |||||||||||   |||||||| || ||||||||||| ||||    
T  36249718 aattatacatgtggcatgccacacatgcattgactggtcaaaattggacaaaaggattaatattgcaaagggcctaa 36249642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 903 - 1015
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||  |||||||| ||||  |||||||||||||||||||||||||||    
T  903 ttaattcaataattacacacgtggcatgccacgtaagcgttgaccggtcaaaattgggaaaaaggaccaaatatgcaaaggggctaattcttggggggcc 1002  T
Q  285 aaaattgtagttt 297  Q
    |||||| ||||||    
T  1003 aaaattatagttt 1015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 409 - 297
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||  |||||||||||||  ||||||||||||||||||| |||| ||    
T  409 ttaattcaataattacacacgtggcatgccacataggcgttgaccggtcaaaattgggaaaaaggatcaaatatgcaaaggggctaattcttaggggacc 310  T
Q  285 aaaattgtagttt 297  Q
    |||||| ||||||    
T  309 aaaattatagttt 297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 28538852 - 28538740
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| ||||||     
T  28538852 ttaattcattaattacacacgtggcatgccacatagacattgaccggtcaaaattgacaaaaaggatcaaagttgcaaaggggctaaatcttagggggct 28538753  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  28538752 aaaattgtagttt 28538740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 36486413 - 36486525
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| |||| |||| ||    
T  36486413 ttaatttattaattacacacgtggcatgccacgtaggcattgaccggtcaaaattgacaaaaaggatcaaagttgcaaagggactaaatcttaggggacc 36486512  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  36486513 aaaattgtagttt 36486525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 185 - 299
Target Start/End: Original strand, 40255597 - 40255711
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| |||||||||| |||| ||| |||| |||||||    
T  40255597 ttaattaaataattacacacgtggcacgccacgtaggcattgaccggtcaaaattgatcaaaaagattaaaattgcaatggggttaaatcttagggggcc 40255696  T
Q  285 aaaattgtagtttct 299  Q
    |||||||||||||||    
T  40255697 aaaattgtagtttct 40255711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 28539745 - 28539857
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||| |||| |||| |||| ||    
T  28539745 ttaatttattaattacacacgtggcatgccacgtaggcattgaccggtcaaaattggcaaaaaggatcaaagttgcaaagggactaaatcttaggggacc 28539844  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  28539845 aaaattgtagttt 28539857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 1797222 - 1797334
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    ||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| |||| | |||||| ||||||||||||||| ||||  ||| ||    
T  1797222 ttaattcaataattacacatgtggcgtgccacataggcattgaccggtcaaaattgaaaaaaggaatcaaagttgcaaaggggctaaatcttaagggacc 1797321  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  1797322 aaaattgtagttt 1797334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 24333089 - 24332977
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||| ||||  |||||||||| ||| |||| | ||| |    
T  24333089 ttaatttaataattacacacgtggcatgccacgtaggcattgactggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagagggtc 24332990  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  24332989 aaaattgtagttt 24332977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 305
Target Start/End: Original strand, 33160212 - 33160331
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||   |||||||| ||| |||| || ||||||| ||||  |||| |    
T  33160212 ttaattcaataattacacatgtggcgtgccacgtaggcattgaccggtcaaaattggctaaaaggattaaagttgc-aatgggctaaatcttaaggggtc 33160310  T
Q  285 aaaattgtagtttctatactt 305  Q
    |||||||||||||||||||||    
T  33160311 aaaattgtagtttctatactt 33160331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 36485476 - 36485364
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||||| ||||||||  ||||||||||||  |||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||| |||| |||||||    
T  36485476 ttaattcattaattacatccgtggcatgccatataggcattgaccggtcaaaattgacaaaaatgatcaaagttgcaaaggggttaaatcttagggggcc 36485377  T
Q  285 aaaattgtagttt 297  Q
    |||||| ||||||    
T  36485376 aaaattatagttt 36485364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 185 - 294
Target Start/End: Complemental strand, 1015660 - 1015551
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    ||||||||||||||||||| |||||||| ||||||||||||||  |||||||||||   ||||||| ||||  ||||||||| ||||||||| |||||      
T  1015660 ttaattcaataattacacatgtggcatgtcacgtaggcattgattggtcaaaattggggaaaaggaccaaatatgcaaagggactaattcttagggggtt 1015561  T
Q  285 aaaattgtag 294  Q
    ||||||||||    
T  1015560 aaaattgtag 1015551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 185 - 305
Target Start/End: Original strand, 18486826 - 18486947
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||||||||||||| |||||||||||| ||||    |||||||||||  ||||||| ||||  |||||||||||||| |||| ||||||    
T  18486826 ttaattaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggc 18486925  T
Q  284 caaaattgtagtttctatactt 305  Q
    ||||||||| ||||||||||||    
T  18486926 caaaattgtggtttctatactt 18486947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 20214372 - 20214259
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| |||||||||||||||||| |||||  ||||| ||||||| ||||||||||| | ||||||  |  |||||||| ||| ||||||||| |||||    
T  20214372 ttaatttaataattacacacgtggcctgccatataggcgttgaccgagtcaaaattgacataaaggactactattgcaaatgggataattcttgaggggc 20214273  T
Q  284 caaaattgtagttt 297  Q
    ||||||||||||||    
T  20214272 caaaattgtagttt 20214259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 20216687 - 20216800
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| |||||||||||||||| | |||||  ||||| ||||||| |||||||||||   ||||||  |  |||||||| |||||||||||||||||||    
T  20216687 ttaatttaataattacacacgtgacctgccatataggcgttgaccgagtcaaaattgacgtaaaggactactattgcaaatgggctaattcttggggggc 20216786  T
Q  284 caaaattgtagttt 297  Q
    ||||||||||||||    
T  20216787 caaaattgtagttt 20216800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 25523246 - 25523133
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccgg-tcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | ||||||||||||||||| ||||||||||| ||||     ||||||||||| ||||||||||||  |||||||||||||| |||| |||||     
T  25523246 ttaattaattaattacacacgtggcaggccacgtaggcgttgaataaatcaaaattgatcaaaaggatcaaagatgcaaaggggctaaatcttagggggt 25523147  T
Q  284 caaaattgtagttt 297  Q
    ||||||||||||||    
T  25523146 caaaattgtagttt 25523133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 303
Target Start/End: Complemental strand, 25055580 - 25055470
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgaccgg-tcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    ||||||||||||||||||||||  |  ||||||||  | ||||||||||| ||||||| ||||  |||||| ||||||| |||| |||||||||||||||    
T  25055580 taattacacacgtggcatgccaaatcagcattgacttgctcaaaattgatcaaaaggaccaaagatgcaaatgggctaaatcttagggggccaaaattgt 25055481  T
Q  293 agtttctatac 303  Q
    ||||| |||||    
T  25055480 agtttttatac 25055470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 1016789 - 1016900
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||   |||| || |||   |||||||| ||||||||||  || | |    
T  1016789 ttaattcaataattacacacgtgacatgctacgtaggcattgaccgatcaaaattggggaaaatgaccaactatgcaaaggagctaattctt-aggagtc 1016887  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  1016888 aaaattgtagttt 1016900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 291
Target Start/End: Complemental strand, 5961582 - 5961476
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||| |||||||||||||| || |||| ||||||||||| |||| || | ||||||||||||  |||||||||| ||| | || ||||||     
T  5961582 ttaattaaataataacacacgtggcatgtcatgtagacattgaccggttaaaaatggtcaaaaggatcaaagatgcaaaggggttaaattttagggggct 5961483  T
Q  285 aaaattg 291  Q
    |||||||    
T  5961482 aaaattg 5961476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 305
Target Start/End: Original strand, 16650779 - 16650900
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccgg-tcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||||| |||||||||||||||||||||||  | || |||||  | ||||||||||  ||||||| ||||  |||||| |||||||  ||| ||||||    
T  16650779 ttaattcattaattacacacgtggcatgccacacatgcgttgacttgatcaaaattgaccaaaaggaccaaagatgcaaatgggctaaaccttagggggc 16650878  T
Q  284 caaaattgtagtttctatactt 305  Q
     ||||||||||||| |||||||    
T  16650879 taaaattgtagtttttatactt 16650900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 19753088 - 19752975
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||||||||||||| |||||||||||| ||||    |||||||||||  ||||||| ||||  ||||| |||||||| || | ||||||    
T  19753088 ttaattaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaatggggctaaatcatagggggc 19752989  T
Q  284 caaaattgtagttt 297  Q
    ||||||||||||||    
T  19752988 caaaattgtagttt 19752975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 288
Target Start/End: Complemental strand, 18485322 - 18485218
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||||||||||||| |||||||||||| ||||    ||||||||| |  ||||||||||||  |||||||||||||| |||| ||||||    
T  18485322 ttaattaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattaaccaaaaggatcaaagatgcaaaggggctaaatcttagggggc 18485223  T
Q  284 caaaa 288  Q
    |||||    
T  18485222 caaaa 18485218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 276
Target Start/End: Original strand, 14061537 - 14061628
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattctt 276  Q
    ||||||||||||||| | |||||||||||||| ||||| |||||| || ||||||  | ||||||||||||| |||||| | ||||| ||||    
T  14061537 ttaattcaataattatatacgtggcatgccacataggcgttgaccagtaaaaatttgtcaaaaggatcaaaaatgcaaatgagctaaatctt 14061628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 297
Target Start/End: Complemental strand, 16650167 - 16650056
Alignment:
Q  187 aattcaataattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcca 285  Q
    |||||| || ||||||||||||||||||||  | ||||||||  ||||||||||||  ||||||| ||||  |||||||||| ||| |||| | ||| ||    
T  16650167 aattcattatttacacacgtggcatgccacacatgcattgacttggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagagggtca 16650068  T
Q  286 aaattgtagttt 297  Q
    ||||||||||||    
T  16650067 aaattgtagttt 16650056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 19754054 - 19754167
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||||||||||||| | |||||||||| ||||    |||||||||| | ||||||| ||||  ||||| |||||||| || | ||||||    
T  19754054 ttaattaattaattacacacgtggccttccacgtaggcgttgaataagtcaaaattgttcaaaaggaccaaagatgcaatggggctaaatcatagggggc 19754153  T
Q  284 caaaattgtagttt 297  Q
    ||||||||||||||    
T  19754154 caaaattgtagttt 19754167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 42195300 - 42195199
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    ||||||||||||||||||||||  |  || |||||  ||||||||||||  ||||||| ||||  |||||||||||||| |||| |||| ||||||||||    
T  42195300 taattacacacgtggcatgccaaatcagcgttgacttggtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttaggggaccaaaattgt 42195201  T
Q  293 ag 294  Q
    ||    
T  42195200 ag 42195199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 271
Target Start/End: Original strand, 22940552 - 22940634
Alignment:
Q  190 tcaataattacacacgtggcatgccacgtaggcattgac-cggtcaaaattgataaaaaggatcaaaattgcaaaggggctaa 271  Q
    |||||||||| |||||||||||||||| ||||| |||||  ||||||||||||  |||||||| |||  || |||||||||||    
T  22940552 tcaataattatacacgtggcatgccacttaggcgttgacttggtcaaaattgaccaaaaggataaaagatgaaaaggggctaa 22940634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 21835157 - 21835104
Alignment:
Q  244 aaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    |||||||||||| ||||||||||| ||| |||| ||||| ||||||||||||||    
T  21835157 aaaaggatcaaagttgcaaaggggttaaatcttagggggtcaaaattgtagttt 21835104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 25524022 - 25524135
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||||||||||||  |||||||||||| ||||    |||||||||||  |||||||  |||  |||||||||||||| |||| |||||     
T  25524022 ttaattaattaattacacacgtggtctgccacgtaggcgttgaataagtcaaaattgaccaaaaggactaaagatgcaaaggggctaaatcttagggggt 25524121  T
Q  284 caaaattgtagttt 297  Q
    ||||||| ||||||    
T  25524122 caaaattatagttt 25524135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 274
Target Start/End: Original strand, 24468509 - 24468601
Alignment:
Q  183 aattaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattc 274  Q
    |||||||| ||||||||||||||||||||| ||| || ||| |||  | |||||||||||| |||||||  || |||| ||| ||||||||||    
T  24468509 aattaattgaataattacacacgtggcatgacacataagcaatgattgagtcaaaattgattaaaaggactaatattgtaaatgggctaattc 24468601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 31599965 - 31599853
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| |||| |||| ||    
T  31599965 ttaatttattaattacacacgtggcatgccacgtaggcattgaccggtcaaaattggcaaaaaggatcaaagttgcaaaggggctaaatcttaggggacc 31599866  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  31599865 aaaattgtagttt 31599853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 31600910 - 31601022
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| ||||||| ||||  |||| |    
T  31600910 ttaattcattaattacacacgtggcatgccacataggcattgaccggtcaaaattgacaaaaaggatcaaagttgcaaatgggctaaatcttaaggggtc 31601009  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  31601010 aaaattgtagttt 31601022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 10448185 - 10448297
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||| ||||  |||||||||||||  |||| | |||||    
T  10448185 ttaattcaataattacacacgtggcatgccacgtaggcattgactggtcaaaattggccaaaaggaccaaagatgcaaaggggctatatcttagagggcc 10448284  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  10448285 aaaattgtagttt 10448297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 185 - 299
Target Start/End: Original strand, 52491534 - 52491646
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||||||||||||||||||||||  |||||||||||||||||| |||||||||||  |||||||| ||| |||||| |||||||| | || |||||||    
T  52491534 ttaattcaataattacacacgtggc--gccacgtaggcattgacctgtcaaaattgaccaaaaggattaaagttgcaatggggctaaattttagggggcc 52491631  T
Q  285 aaaattgtagtttct 299  Q
    |||||||||||||||    
T  52491632 aaaattgtagtttct 52491646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 35935458 - 35935570
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||   |||||||| ||| |||||| | |||||| |||| |||||||    
T  35935458 ttaattcaataattatacacgtggcgtgccacataggcattgaccggtcaaaattggccaaaaggattaaagttgcaatgaggctaaatcttagggggcc 35935557  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  35935558 aaaattgtagttt 35935570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 305
Target Start/End: Complemental strand, 35934518 - 35934398
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||  ||||| || ||| |||||| |||||||| ||||  ||||||    
T  35934518 ttaattcattaattacacacgtgacatgccacgtaggcattgactggtcaaaattgaccaaaagaattaaagttgcaatggggctaaatcttaaggggcc 35934419  T
Q  285 aaaattgtagtttctatactt 305  Q
    |||||| || ||||| |||||    
T  35934418 aaaattataatttctttactt 35934398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 21178172 - 21178060
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||||| ||||| |||||||||| |||||| |||||||||||| ||||||||||  ||||| ||||||| ||||||| ||||||| | || ||||| |    
T  21178172 ttaattcattaattgcacacgtggcgtgccacataggcattgaccagtcaaaattggcaaaaatgatcaaagttgcaaaagggctaaattttagggggtc 21178073  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  21178072 aaaattgtagttt 21178060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 305
Target Start/End: Original strand, 8758766 - 8758882
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| ||||||||||||||||||    |||||||||||||| || ||||||||||  |||||||| |||||||||| || ||||| ||||  ||||||    
T  8758766 ttaattaaataattacacacgtggc----cacgtaggcattgatcgatcaaaattgaccaaaaggattaaaattgcaatggagctaaatcttaaggggcc 8758861  T
Q  285 aaaattgtagtttctatactt 305  Q
    ||||||||||||||| |||||    
T  8758862 aaaattgtagtttctgtactt 8758882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 303
Target Start/End: Original strand, 50909597 - 50909716
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattctt-ggggggc 283  Q
    |||||| ||||||||||| ||| ||||| ||| ||| ||||||||||||||||||||| ||||||| ||||  |||||||||||||| ||||  |||||     
T  50909597 ttaattaaataattacacgcgttgcatgtcacatagacattgaccggtcaaaattgatcaaaaggaccaaagatgcaaaggggctaaatcttaagggggt 50909696  T
Q  284 caaaattgtagtttctatac 303  Q
    |||||||||||||| |||||    
T  50909697 caaaattgtagtttttatac 50909716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 17388135 - 17388248
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    ||||||||||||||||||||||||| |||||  ||||| ||||||  |||||||||||   ||||||  |  |||| |||||||||||||||||||||||    
T  17388135 ttaattcaataattacacacgtggcctgccatataggcgttgaccaagtcaaaattgacctaaaggactactattgtaaaggggctaattcttggggggc 17388234  T
Q  284 caaaattgtagttt 297  Q
    ||||||||||||||    
T  17388235 caaaattgtagttt 17388248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 186 - 297
Target Start/End: Complemental strand, 10447182 - 10447071
Alignment:
Q  186 taattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcca 285  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||    ||||||| ||||  |||||||||||||| |||| |||||  |    
T  10447182 taattcaataattacacacgtggcgtgccacgtaggcattgactggttaaaattagccaaaaggaccaaagatgcaaaggggctaaatcttaggggggta 10447083  T
Q  286 aaattgtagttt 297  Q
    ||||||| ||||    
T  10447082 aaattgtggttt 10447071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 46637859 - 46637804
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattg 240  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46637859 ttaattcaataattacacatgtggcatgccacgtaggcattgaccggtcaaaattg 46637804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 305
Target Start/End: Complemental strand, 8757822 - 8757730
Alignment:
Q  212 gccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagtttctatactt 305  Q
    ||||||||||||||||||| ||||||||||  |||||||| |||||||||| |||||||| ||||  ||| ||||||||||||||||| |||||    
T  8757822 gccacgtaggcattgaccg-tcaaaattgaccaaaaggattaaaattgcaatggggctaaatcttaagggtccaaaattgtagtttctgtactt 8757730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 194 - 297
Target Start/End: Original strand, 1290131 - 1290235
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgac-cggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    |||||||||| |||||||||||| ||||| ||||| |||||||||||||  ||||||| ||||  |||||||||| ||| |||| |||||| ||||||||    
T  1290131 taattacacatgtggcatgccacttaggcgttgactcggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagggggctaaaattgt 1290230  T
Q  293 agttt 297  Q
    |||||    
T  1290231 agttt 1290235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 17383169 - 17383056
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    ||||||||||||||||||| ||||  |||||  ||||| ||||||  |||||||||||   ||||||  |  |||||||||||| |||||||||||||||    
T  17383169 ttaattcaataattacacaggtggtctgccatataggcgttgaccaagtcaaaattgacctaaaggactactattgcaaaggggataattcttggggggc 17383070  T
Q  284 caaaattgtagttt 297  Q
    ||||||||||||||    
T  17383069 caaaattgtagttt 17383056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 1963328 - 1963260
Alignment:
Q  229 cggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    |||||||||||| ||||||||| ||  ||||||||||||||||||||| |||||| |||||||||||||    
T  1963328 cggtcaaaattgctaaaaaggaccactattgcaaaggggctaattcttagggggctaaaattgtagttt 1963260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 272
Target Start/End: Complemental strand, 54108035 - 54107948
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaat 272  Q
    ||||||||||||||||||||||||| ||||| |||||||||||| ||| |||||||   |||| || ||||  |||||||||||||||    
T  54108035 ttaattcaataattacacacgtggcgtgccatgtaggcattgactggttaaaattggccaaaaagaccaaagatgcaaaggggctaat 54107948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 305
Target Start/End: Complemental strand, 1289269 - 1289153
Alignment:
Q  190 tcaataattacacacgtggcatgccacgtaggcattgac-cggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaa 288  Q
    |||||||||| |||||||||||||||| || || ||||| |||||||||||||  ||||||| ||||  ||||| |||| ||| ||||  | ||| ||||    
T  1289269 tcaataattatacacgtggcatgccacttaagcgttgactcggtcaaaattgaccaaaaggaccaaagatgcaagggggttaaatcttaagaggctaaaa 1289170  T
Q  289 ttgtagtttctatactt 305  Q
    ||||||||| |||||||    
T  1289169 ttgtagtttttatactt 1289153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 297
Target Start/End: Original strand, 1835035 - 1835139
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    ||||||||||||||||||||||  || || ||||||  ||||||||||   ||||||| ||||  |||||||||||||| |||| ||||| |||||||||    
T  1835035 taattacacacgtggcatgccaaataagcgttgaccaagtcaaaattggctaaaaggaccaaagatgcaaaggggctaaatcttagggggtcaaaattgt 1835134  T
Q  293 agttt 297  Q
    |||||    
T  1835135 agttt 1835139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 303
Target Start/End: Complemental strand, 1834288 - 1834177
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattctt-ggggggccaaaattg 291  Q
    ||||||||||||||||||||||  |  |||||||   ||||||||||||  ||||||| ||||  |||||| ||||||| |||| |||||||||||||||    
T  1834288 taattacacacgtggcatgccaaatcagcattgatttggtcaaaattgaccaaaaggaccaaagatgcaaatgggctaaatcttaggggggccaaaattg 1834189  T
Q  292 tagtttctatac 303  Q
    |||||| |||||    
T  1834188 tagtttttatac 1834177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 8896835 - 8896940
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgac-cggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||| |||||||||||||||| ||||| ||||| |||||||||||||  |||| | |||| |||||||||||||||| ||||  ||| |    
T  8896835 ttaatttagtaattatacacgtggcatgccacttaggcgttgactcggtcaaaattgaccaaaaag-tcaatattgcaaaggggctaaatcttaagggac 8896933  T
Q  284 caaaatt 290  Q
    |||||||    
T  8896934 caaaatt 8896940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 12129800 - 12129687
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||||||||||||| |||||||||||| ||||    |||||||||||| |||| || ||||  |||||| ||||||| ||||  ||||     
T  12129800 ttaattaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgatcaaaatgaccaaagatgcaaatgggctaaatcttaaggggt 12129701  T
Q  284 caaaattgtagttt 297  Q
    ||||||||||||||    
T  12129700 caaaattgtagttt 12129687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 297
Target Start/End: Original strand, 1964374 - 1964478
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    ||||||||||||||||||||||  |  || |||||  ||||||||||| ||||||||| ||  || ||||||||| ||||||||  ||| ||||||||||    
T  1964374 taattacacacgtggcatgccaaatcagcgttgacttggtcaaaattgctaaaaaggaccactatcgcaaaggggataattcttaagggaccaaaattgt 1964473  T
Q  293 agttt 297  Q
    |||||    
T  1964474 agttt 1964478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 297
Target Start/End: Original strand, 13509284 - 13509396
Alignment:
Q  186 taattcaataattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    ||||||| || ||||||| ||||||||||||  | || |||||  |||||||||||   ||||||| ||||  |||||||||||||| |||| ||||  |    
T  13509284 taattcattatttacacatgtggcatgccacacatgcgttgacttggtcaaaattggccaaaaggagcaaaggtgcaaaggggctaaatcttaggggatc 13509383  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  13509384 aaaattgtagttt 13509396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 44890933 - 44890878
Alignment:
Q  4 attcatgagtttgggtttgaatggaagaagaagaagaacctggaggagtatgaagaaga 62  Q
    ||||||||||||||||||||||||||||   |||| ||| |||||||||||| ||||||    
T  44890933 attcatgagtttgggtttgaatggaaga---agaaaaacatggaggagtatgtagaaga 44890878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 2193425 - 2193476
Alignment:
Q  230 ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggg 281  Q
    ||||||||||  | |||||||||||||||| |||||||||||||||| ||||    
T  2193425 ggtcaaaattagtcaaaaggatcaaaattgtaaaggggctaattcttagggg 2193476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 5526096 - 5526163
Alignment:
Q  230 ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    ||||||||||| | ||||||| ||||||||||| |||||||| |||| ||||| | ||||||| ||||    
T  5526096 ggtcaaaattggtcaaaaggaccaaaattgcaatggggctaaatcttaggggggctaaattgtggttt 5526163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 19750545 - 19750612
Alignment:
Q  230 ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    |||||||| |||  |||||||||||| |||||| |||||||| |||| |||||  |||||||||||||    
T  19750545 ggtcaaaagtgaccaaaaggatcaaatttgcaatggggctaaatcttaggggggtaaaattgtagttt 19750612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 297
Target Start/End: Complemental strand, 19789261 - 19789194
Alignment:
Q  230 ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    |||||||| |||  |||||||||||| |||||| |||||||| |||| |||||  |||||||||||||    
T  19789261 ggtcaaaagtgaccaaaaggatcaaatttgcaatggggctaaatcttaggggggtaaaattgtagttt 19789194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 297
Target Start/End: Complemental strand, 25685065 - 25684998
Alignment:
Q  230 ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    ||||||||||||| ||||||| |||| |||||| |||||||| |||| ||||| | ||||||| ||||    
T  25685065 ggtcaaaattgatcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttt 25684998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 292
Target Start/End: Complemental strand, 10470677 - 10470615
Alignment:
Q  230 ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    ||||||||||||| ||||||| |||| |||||| |||||||| |||| ||||| | |||||||    
T  10470677 ggtcaaaattgatcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgt 10470615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 43242683 - 43242654
Alignment:
Q  6 tcatgagtttgggtttgaatggaagaagaa 35  Q
    ||||||||||||||||||||||||||||||    
T  43242683 tcatgagtttgggtttgaatggaagaagaa 43242654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 55603456 - 55603568
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| |||||||||||||||||| |||||   |||| |||| || ||||||||||| | ||||||  |  |||||||| | ||| |||||| ||||||    
T  55603456 ttaatttaataattacacacgtggcctgccatacaggcgttgatcgagtcaaaattgacataaaggactactattgcaaatgagcttattctt-gggggc 55603554  T
Q  284 caaaattgtagttt 297  Q
    |||||| |||||||    
T  55603555 caaaatagtagttt 55603568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 50909438 - 50909386
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaa 237  Q
    |||||| |||||||||||||||||| |||||| |||  |||||| ||||||||    
T  50909438 ttaattaaataattacacacgtggcgtgccacatagatattgactggtcaaaa 50909386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 187 - 305
Target Start/End: Original strand, 39699694 - 39699812
Alignment:
Q  187 aattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaa 286  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||  |||||||| ||| |||||| |||||||| |||| |||||||||    
T  39699694 aattcaataattacacacatggcgtgccacgtaggcattgaccggtcaaaattgaccaaaaggattaaagttgcaatggggctaaatcttagggggccaa 39699793  T
Q  287 aattgtagtttctatactt 305  Q
    ||||||||||||| |||||    
T  39699794 aattgtagtttctgtactt 39699812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 39153041 - 39153153
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||| ||||  |||||||||| ||| |||| | ||| |    
T  39153041 ttaatttaataattacacacgtggcatgccacgtaggcattgactggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagagggtc 39153140  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  39153141 aaaattgtagttt 39153153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 44411891 - 44412003
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||| |||||||||| |||| ||||   |||      
T  44411891 ttaatttaataattacacacgtggcgtgccacgtaggcattgaccggtcaaaattggcaaaaaggatcaaagttgcaaagggcctaaatcttaaaggggt 44411990  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  44411991 aaaattgtagttt 44412003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 45149895 - 45150008
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattctt-ggggggc 283  Q
    |||||| |||||||||||||||||||| |||||||||| |||||||||||||||||   ||||||||||||  |||||||||||||| |||| ||||||     
T  45149895 ttaatttaataattacacacgtggcattccacgtaggctttgaccggtcaaaattggccaaaaggatcaaagatgcaaaggggctaaatcttaggggggg 45149994  T
Q  284 caaaattgtagttt 297  Q
    ||||||||| ||||    
T  45149995 caaaattgttgttt 45150008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 45148756 - 45148644
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||||||||| |||||||||||||||||| |||||||||||||||||   ||||||| ||||  |||||||||| ||| |||| ||||| |    
T  45148756 ttaatttaataattacacatgtggcatgccacgtaggctttgaccggtcaaaattggccaaaaggaccaaagatgcaaaggggttaaatcttaggggggc 45148657  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  45148656 aaaattgtagttt 45148644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 14999457 - 14999381
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgca 261  Q
    |||||||| || |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  14999457 ttaattcattagttacacacatggcatgccacgtaggcattgaccggtcaaaattgacaaaaaggatcaaagttgca 14999381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 44404618 - 44404506
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||  |||| || ||||  ||||||  |||||| | || |||||||    
T  44404618 ttaatttaataattacacacgtggcgtgccacgtaggcattgaccggtcaaaattgaccaaaatgaccaaagatgcaaattggctaaattttagggggcc 44404519  T
Q  285 aaaattgtagttt 297  Q
    |||||| ||||||    
T  44404518 aaaattatagttt 44404506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 39152107 - 39151995
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||  ||||||| ||||  |||||||||| ||| ||||   | | |    
T  39152107 ttaatttaataattacacatgtggcatgccacgtaggcattgactggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttaaagagtc 39152008  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  39152007 aaaattgtagttt 39151995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 14999876 - 14999958
Alignment:
Q  185 ttaattcaataattacacacgtggc----atgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaa 263  Q
    |||||||| ||||||||||||||||    ||||||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  14999876 ttaattcattaattacacacgtggctggcatgccacgtaggcattgacaggtcaaaattgacaaaaaggatcaaagttgcaaa 14999958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 24422965 - 24422864
Alignment:
Q  197 ttacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagt 295  Q
    ||||||||||||||||||||  |||| |||||   |||||||||||  |||||||||||| |||||| |||||||| |||| ||||||||||||||||||    
T  24422965 ttacacacgtggcatgccacacaggcgttgactatgtcaaaattgaccaaaaggatcaaatttgcaatggggctaaatcttagggggccaaaattgtagt 24422866  T
Q  296 tt 297  Q
    ||    
T  24422865 tt 24422864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 194 - 305
Target Start/End: Complemental strand, 11436210 - 11436098
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgac-cggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    |||||||||| |||||||||||| ||||| ||||| |||||||||||||  ||||| | ||||  |||||| ||| ||| |||| |||||||||||||||    
T  11436210 taattacacatgtggcatgccacttaggcgttgactcggtcaaaattgaccaaaagaaccaaagatgcaaatgggttaaatcttagggggccaaaattgt 11436111  T
Q  293 agtttctatactt 305  Q
    ||||| |||||||    
T  11436110 agtttttatactt 11436098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 297
Target Start/End: Original strand, 11437128 - 11437236
Alignment:
Q  190 tcaataattacacacgtggcatgccacgtaggcattgac-cggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaa 288  Q
    |||||||||| |||||||||||||||| || || ||||| |||||||||||||  ||||||||||||  || ||| ||| ||| |||| |||||||||||    
T  11437128 tcaataattatacacgtggcatgccacttaagcgttgactcggtcaaaattgaccaaaaggatcaaagatgtaaaagggttaaatcttagggggccaaaa 11437227  T
Q  289 ttgtagttt 297  Q
    |||||||||    
T  11437228 ttgtagttt 11437236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 36613828 - 36613941
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||||||||||||| |||||||||||| ||||    |||||||||||| |||||||  ||| |||||||| |||||| |||| |||||     
T  36613828 ttaattaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgatcaaaaggactaaagttgcaaagaggctaaatcttagggggt 36613927  T
Q  284 caaaattgtagttt 297  Q
    ||||||||||||||    
T  36613928 caaaattgtagttt 36613941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 305
Target Start/End: Complemental strand, 39698734 - 39698619
Alignment:
Q  189 ttcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaa 288  Q
    |||||||||||||||| | || ||||| ||||| |||||||||||||||||||  |||||||| ||| |||||| | |||||| ||||  | ||||||||    
T  39698734 ttcaataattacacactttgcgtgccatgtaggtattgaccggtcaaaattgaccaaaaggattaaagttgcaacgaggctaaatctt-agtggccaaaa 39698636  T
Q  289 ttgtagtttctatactt 305  Q
    || |||||||| |||||    
T  39698635 ttatagtttctgtactt 39698619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 46525730 - 46525827
Alignment:
Q  190 tcaataattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaa 287  Q
    ||||||||||||||||||||||||||  || || |||||  ||||||||||||  ||||| |||| ||||||||||||||||| |||| ||||||||||    
T  46525730 tcaataattacacacgtggcatgccaaataagcgttgacttggtcaaaattgaccaaaag-atcacaattgcaaaggggctaaatcttagggggccaaa 46525827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 281
Target Start/End: Original strand, 16281227 - 16281321
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggg 281  Q
    |||||||||||||||||||||  ||||| || |||||||||||| |||||||||||  ||||| || ||||  |||||||||| ||||| |||||||    
T  16281227 ttaattcaataattacacacg--gcatgtcaggtaggcattgacgggtcaaaattgggaaaaatgaccaaatatgcaaaggggttaatttttggggg 16281321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 52275133 - 52275032
Alignment:
Q  197 ttacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagt 295  Q
    |||||||| |||||||||||| |||| |||||   |||||||||||  |||||||||||| |||||| | |||||| |||| |||| |||||||||||||    
T  52275133 ttacacacttggcatgccacgcaggcgttgactatgtcaaaattgaccaaaaggatcaaatttgcaatgaggctaaatcttaggggcccaaaattgtagt 52275034  T
Q  296 tt 297  Q
    ||    
T  52275033 tt 52275032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 302
Target Start/End: Original strand, 37526802 - 37526919
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||||||||||||| | |||||||||| ||||    |||||||||||| |||| || ||||  |||||||||||||| ||||  |||||    
T  37526802 ttaattaattaattacacacgtggcctaccacgtaggcgttgaataagtcaaaattgatcaaaaagaccaaagatgcaaaggggctaaatctt-aggggc 37526900  T
Q  284 caaaattgtagtttctata 302  Q
    ||||||||| |||||||||    
T  37526901 caaaattgtggtttctata 37526919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 43378637 - 43378746
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgac-cggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    ||||||||||| |||||||||||||||||||| || || |||||  ||||||||| ||  |||||||| |||  |||||||| ||||| |||| || ||     
T  43378637 ttaattcaatatttacacacgtggcatgccacatatgcgttgacttggtcaaaatcgaccaaaaggattaaagatgcaaaggtgctaaatcttaggtggt 43378736  T
Q  284 caaaattgta 293  Q
    ||||||||||    
T  43378737 caaaattgta 43378746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 305
Target Start/End: Complemental strand, 50680508 - 50680387
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||||||||||||| ||| |||||||| ||||    |||||||||||  ||||||||||||  |||||||||| ||| |||| |||| |    
T  50680508 ttaattaattaattacacacgtggcctgctacgtaggcgttgaataagtcaaaattgaccaaaaggatcaaagatgcaaaggggttaaatcttaggggac 50680409  T
Q  284 caaaattgtagtttctatactt 305  Q
     |||||| |||||| |||||||    
T  50680408 taaaattatagtttttatactt 50680387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 51684497 - 51684424
Alignment:
Q  230 ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagtttctatac 303  Q
    |||||||||||   ||||||| ||||  |||||||||||||| |||| |||||||||||||||||||| |||||    
T  51684497 ggtcaaaattggccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaaattgtagtttttatac 51684424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 281
Target Start/End: Original strand, 52276087 - 52276184
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggg 281  Q
    |||||||| || |||||| |||||||||||| | | || |||||  ||||||||||||| |||||||||||| |||||| |||||||| |||| ||||    
T  52276087 ttaattcattatttacacgcgtggcatgccatgcaagcgttgactaggtcaaaattgatcaaaaggatcaaatttgcaatggggctaaatcttagggg 52276184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 292
Target Start/End: Original strand, 35595125 - 35595223
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    ||||||||||||||||||||||  |  ||||||||  ||||||||||||  ||||||| ||||  |||||||||||||| ||||  ||||||||||||||    
T  35595125 taattacacacgtggcatgccaaatcagcattgacttggtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatctt-aggggccaaaattgt 35595223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 297
Target Start/End: Original strand, 45157163 - 45157246
Alignment:
Q  214 cacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    ||||||||||||||| ||||||||||||  ||||||| ||||  |||||||||| ||| ||||   ||| ||||||||||||||    
T  45157163 cacgtaggcattgactggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttaaagggtcaaaattgtagttt 45157246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 292
Target Start/End: Original strand, 14512547 - 14512654
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgac-cggtcaaaattg-ataaaaaggatcaaaattgcaaaggggctaattcttgggggg 282  Q
    |||||| | ||||||||||||||||||||||| ||||| |||||  |||||||||||  |||||||  |||  |||||||||||||||| || | ||||     
T  14512547 ttaatttagtaattacacacgtggcatgccacttaggcgttgactaggtcaaaattgcctaaaaag--tcactattgcaaaggggctaaatcatagggga 14512644  T
Q  283 ccaaaattgt 292  Q
    ||||||||||    
T  14512645 ccaaaattgt 14512654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 303
Target Start/End: Complemental strand, 16290270 - 16290152
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    ||||||||||||||||||| |||||||| || |  |||  ||||  ||||||||||  ||||| || ||||  || ||||||| ||||||||||| ||      
T  16290270 ttaattcaataattacacatgtggcatgtcatgatggcgctgactagtcaaaattggaaaaaatgaccaaatatgtaaaggggttaattcttgggaggtt 16290171  T
Q  285 aaaattgtagtttctatac 303  Q
    ||||||||||||| |||||    
T  16290170 aaaattgtagtttttatac 16290152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 46524706 - 46524613
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaa 287  Q
    ||||||||||||||||||||||  || || |||||  |||||||||||   ||||| |||| ||||||||||||||||| |||| ||||||||||    
T  46524706 taattacacacgtggcatgccaaataagcgttgacttggtcaaaattggccaaaag-atcacaattgcaaaggggctaaatcttagggggccaaa 46524613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 17505093 - 17505040
Alignment:
Q  229 cggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttgggggg 282  Q
    ||||||||||||| |||||  ||||| |||||||| ||||||||||||||||||    
T  17505093 cggtcaaaattgacaaaaaatatcaatattgcaaatgggctaattcttgggggg 17505040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 24426045 - 24426112
Alignment:
Q  230 ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    ||||||||||||  ||||| |||||| |||||| |||||||| |||| |||| | |||||||||||||    
T  24426045 ggtcaaaattgaccaaaagtatcaaatttgcaatggggctaaatcttaggggactaaaattgtagttt 24426112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 33088243 - 33088188
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattg 240  Q
    |||||| |||||||||||||| ||| | |||||||||| ||||||||| |||||||    
T  33088243 ttaatttaataattacacacgcggcgtaccacgtaggctttgaccggttaaaattg 33088188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 39221491 - 39221404
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaa 271  Q
    |||||| | |||||||||||||||| |||||||||||| ||||    |||||||||||  ||||||| ||||  ||||||||||||||    
T  39221491 ttaattaattaattacacacgtggcctgccacgtaggcgttgaattagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaa 39221404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 46312232 - 46312185
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattg 240  Q
    ||||||||||||||||||||||| ||||| |||||| |||||||||||    
T  46312232 taattacacacgtggcatgccacctaggcgttgaccaggtcaaaattg 46312185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 35066973 - 35067039
Alignment:
Q  231 gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    |||||||||||  |||||||  |  |||||||||||||||| | || ||||||||||||||||||||    
T  35066973 gtcaaaattgaccaaaaggactattattgcaaaggggctaaatattagggggccaaaattgtagttt 35067039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 43058915 - 43058849
Alignment:
Q  231 gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    |||||||||||  ||||||||||||  || ||||||||||| |||| | |||| |||||||||||||    
T  43058915 gtcaaaattgaccaaaaggatcaaagatgtaaaggggctaaatcttagagggctaaaattgtagttt 43058849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 305
Target Start/End: Complemental strand, 43377897 - 43377776
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgac-cggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||||| || ||||||||||||||||||||  | || |||||  ||||||||||||  ||||||||||||  || |||| | |||| | || || |||    
T  43377897 ttaattcattatttacacacgtggcatgccacacatgcgttgacttggtcaaaattgaccaaaaggatcaaaggtgtaaagagactaaattttaggaggc 43377798  T
Q  284 caaaattgtagtttctatactt 305  Q
    ||||||| || ||| |||||||    
T  43377797 caaaattataatttttatactt 43377776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 51685749 - 51685802
Alignment:
Q  244 aaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    ||||||| ||||  |||||||||||||| |||| ||||| ||||||||||||||    
T  51685749 aaaaggaccaaagatgcaaaggggctaaatcttagggggtcaaaattgtagttt 51685802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 21946523 - 21946587
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaag 248  Q
    |||||| ||||||||||||||||||||| || ||| || |||| || ||||||||||| ||||||    
T  21946523 ttaatttaataattacacacgtggcatgtcatgtaagcgttgatcgagtcaaaattgaaaaaaag 21946587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 297
Target Start/End: Complemental strand, 35594383 - 35594280
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    ||||||||||||||||||||||  || || ||||||  ||||||||||   ||||||| ||||  |||||||||||||| | ||  |||| |||||||||    
T  35594383 taattacacacgtggcatgccaaataagcgttgaccaagtcaaaattggctaaaaggaccaaagatgcaaaggggctaaat-tttaggggtcaaaattgt 35594285  T
Q  293 agttt 297  Q
    |||||    
T  35594284 agttt 35594280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 3233 - 3345
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||||| |||| ||||| ||||||||| ||||||||||||||| || |||||||  ||||||||||||| ||||||||||||||| |||| |||| ||    
T  3233 ttaattcattaataacacatgtggcatgctacgtaggcattgaccagtaaaaattggcaaaaaggatcaaagttgcaaaggggctaaatcttaggggacc 3332  T
Q  285 aaaattgtagttt 297  Q
    |||||| ||||||    
T  3333 aaaattatagttt 3345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 14999080 - 14999192
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| ||||||||||||  |||||||||||||| |||||||||||||||||||||   |||||| ||||  |||||||||||||| |||| ||| |||    
T  14999080 ttaatttaataattacacatatggcatgccacgtaagcattgaccggtcaaaattgacctaaaggaacaaagatgcaaaggggctaaatcttagggcgcc 14999179  T
Q  285 aaaattgtagttt 297  Q
    |||||||||||||    
T  14999180 aaaattgtagttt 14999192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 185 - 305
Target Start/End: Complemental strand, 7500631 - 7500510
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | ||||||||||| |||| |||||||||||| ||||    |||||||||||  ||||||||||||  |||||||||||||| |||| ||||||    
T  7500631 ttaattaattaattacacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggatcaaagatgcaaaggggctaaatcttagggggc 7500532  T
Q  284 caaaattgtagtttctatactt 305  Q
    ||||||||| ||||||||||||    
T  7500531 caaaattgtggtttctatactt 7500510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 34351664 - 34351609
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattg 240  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34351664 ttaattcaataattacacacgtggcgtgccacgtaggcattgaccggtcaaaattg 34351609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 198 - 297
Target Start/End: Original strand, 42886224 - 42886323
Alignment:
Q  198 tacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    ||||||||||||||||||| ||| |||||| |||||||||||||  |||| |||||||  |||||| ||||||| |||| |||||| |||||||||||||    
T  42886224 tacacacgtggcatgccacatagacattgatcggtcaaaattgaccaaaatgatcaaagatgcaaatgggctaaatcttagggggctaaaattgtagttt 42886323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 195 - 293
Target Start/End: Complemental strand, 14998145 - 14998048
Alignment:
Q  195 aattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgta 293  Q
    ||||||||||||||||||| | |||||||||||||| | ||||||||  ||||||| ||||  |||||||||||||| |||| ||||||||||||||||    
T  14998145 aattacacacgtggcatgc-atgtaggcattgaccgattaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaaattgta 14998048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 11658556 - 11658443
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| |||||||||||||||||| |||||  ||||| ||||||| ||||||||||| | ||||||  |  ||| |||||||||||||||||| ||| |    
T  11658556 ttaatttaataattacacacgtggcctgccatataggcgttgaccgagtcaaaattgacataaaggactactattacaaaggggctaattcttgagggac 11658457  T
Q  284 caaaattgtagttt 297  Q
    ||||||||||||||    
T  11658456 caaaattgtagttt 11658443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 22629663 - 22629550
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | ||||||||||||||||| ||||||||||| ||||    |||||||||||  ||||||| ||||  |||||||||||||| |||| ||||||    
T  22629663 ttaattaattaattacacacgtggcaggccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggc 22629564  T
Q  284 caaaattgtagttt 297  Q
    ||||||||||||||    
T  22629563 caaaattgtagttt 22629550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 31659788 - 31659687
Alignment:
Q  197 ttacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagt 295  Q
    ||||||||||||||||||||| | || |||||   |||||||||||  |||||||||||| |||||| |||||||| |||| ||||||||||||||||||    
T  31659788 ttacacacgtggcatgccacgcatgcgttgactatgtcaaaattgaccaaaaggatcaaatttgcaatggggctaaatcttagggggccaaaattgtagt 31659689  T
Q  296 tt 297  Q
    ||    
T  31659688 tt 31659687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 34352711 - 34352823
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||   |||| ||| ||| ||||||   || ||| |||| | |||||    
T  34352711 ttaattcaataattacacacgtggcgtgtcacgtaggcattgaccggtcaaaattggccaaaatgattaaagttgcaataaggttaaatcttagagggcc 34352810  T
Q  285 aaaattgtagttt 297  Q
    |||||| ||||||    
T  34352811 aaaattatagttt 34352823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 290
Target Start/End: Original strand, 770693 - 770791
Alignment:
Q  192 aataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaatt 290  Q
    |||||||||| ||||| |   |||||||| ||||||||||||||||||||  |||| |||||||  |||||||||||||| | || |||||||||||||    
T  770693 aataattacatacgtgactgaccacgtagacattgaccggtcaaaattgaccaaaatgatcaaagatgcaaaggggctaaattttagggggccaaaatt 770791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 7501776 - 7501889
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||||||||||||| |||||||||||||||||    |||||||||||  ||||||| ||||  |||||||||||||  ||||  |||||    
T  7501776 ttaattaattaattacacacgtggcctgccacgtaggcattgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctacatcttaaggggc 7501875  T
Q  284 caaaattgtagttt 297  Q
    ||||||||| ||||    
T  7501876 caaaattgttgttt 7501889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 11662515 - 11662588
Alignment:
Q  224 ttgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    ||||||| |||||||||| | ||||||  |  ||||||||||||||||||||||||||||||||||| ||||||    
T  11662515 ttgaccgatcaaaattgacataaaggactactattgcaaaggggctaattcttggggggccaaaattatagttt 11662588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 297
Target Start/End: Complemental strand, 18371592 - 18371488
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    |||||| ||||||||| |||||||||||| ||||    |||||||||||  ||||||||||||  |||||| | ||||| |||| |||||||||||||||    
T  18371592 taattatacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggatcaaagatgcaaatgtgctaaatcttagggggccaaaattgt 18371493  T
Q  293 agttt 297  Q
    |||||    
T  18371492 agttt 18371488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 33132013 - 33131956
Alignment:
Q  4 attcatgagtttgggtttgaatggaagaagaagaagaacctggaggagtatgaagaagaag 64  Q
    |||||||||||||||||||||||||||||||   |||| || |||||||||||||||||||    
T  33132013 attcatgagtttgggtttgaatggaagaaga---agaatcttgaggagtatgaagaagaag 33131956  T

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Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 290
Target Start/End: Complemental strand, 769589 - 769484
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||||||||||||  | ||||||||||  ||||| ||||||||||||   ||||||||||||  |||||| ||| |||||||  ||| |||    
T  769589 ttaattaaataattacacacgtaacgtgccacgtagatattgatcggtcaaaattgggcaaaaggatcaaagatgcaaatgggttaattctaagggagcc 769490  T
Q  285 aaaatt 290  Q
    ||||||    
T  769489 aaaatt 769484  T

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Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 297
Target Start/End: Original strand, 18372381 - 18372494
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | ||||||||||||||||| ||||| ||| | ||||    |||||||||||  ||||||| ||||  | |||||||||||| |||| ||||||    
T  18372381 ttaattaattaattacacacgtggcaggccacatagacgttgaataagtcaaaattgaccaaaaggaccaaagatacaaaggggctaaatcttagggggc 18372480  T
Q  284 caaaattgtagttt 297  Q
    ||||||||||||||    
T  18372481 caaaattgtagttt 18372494  T

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Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 302
Target Start/End: Complemental strand, 6618374 - 6618266
Alignment:
Q  195 aattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgta 293  Q
    ||||||||| |||||||||||| ||||| |||||  ||||||||||||| |||| ||||||| |||||| | ||| || |||| ||| | ||||||||||    
T  6618374 aattacacatgtggcatgccacataggcgttgactaggtcaaaattgatcaaaatgatcaaatttgcaatgaggcaaaatcttagggagtcaaaattgta 6618275  T
Q  294 gtttctata 302  Q
     ||| ||||    
T  6618274 atttttata 6618266  T

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Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 291
Target Start/End: Original strand, 32253352 - 32253458
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||||| |||  |||| |||||||||| ||||||||||||||||||    ||||||| ||||  ||||||||| |||| |||| || || |    
T  32253352 ttaattaaataattatacagatggcgtgccacgtagacattgaccggtcaaaatttgccaaaaggaccaaagatgcaaagggactaaatcttaggtggtc 32253451  T
Q  285 aaaattg 291  Q
    |||||||    
T  32253452 aaaattg 32253458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 33131921 - 33131885
Alignment:
Q  69 ttgatgagtgattttaattggatgatttgattttaaa 105  Q
    ||||||| |||||||||||||||||||||||||||||    
T  33131921 ttgatgaatgattttaattggatgatttgattttaaa 33131885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 297
Target Start/End: Complemental strand, 31949453 - 31949386
Alignment:
Q  230 ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    ||||||||||||| ||||||| |||| |||||| |||||||| |||| ||||| | ||||||| ||||    
T  31949453 ggtcaaaattgatcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttt 31949386  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 265
Target Start/End: Complemental strand, 46482774 - 46482693
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaagg 265  Q
    |||||| | ||||||||||| |||| |||||||||||||||||    |||||||||||  |||||||| |||| ||||||||    
T  46482774 ttaattaattaattacacacatggcttgccacgtaggcattgaataagtcaaaattgaccaaaaggataaaaaatgcaaagg 46482693  T

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Target: scaffold0059 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 304
Target Start/End: Complemental strand, 3851 - 3732
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    |||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||  |||| ||| ||| |||||| | |||||| |||| |||| |     
T  3851 ttaattaaataattacacacgtggcgtgccacgtaggcattgaccagtcaaaattgaccaaaaagattaaagttgcaatgcggctaaatcttaggggact 3752  T
Q  285 aaaattgtagtttctatact 304  Q
    |||||| |||||||| ||||    
T  3751 aaaattatagtttctttact 3732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 299
Target Start/End: Original strand, 4655 - 4769
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggcc 284  Q
    ||||||||||  |||||||| || |||| |||||||||||||| |||||||||||| | |||||||| ||| |||||| ||||||||   || | ||| |    
T  4655 ttaattcaatcgttacacacatgacatgtcacgtaggcattgatcggtcaaaattggtcaaaaggattaaagttgcaatggggctaaaatttagagggtc 4754  T
Q  285 aaaattgtagtttct 299  Q
    |||||||||||||||    
T  4755 aaaattgtagtttct 4769  T

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Target: scaffold0049 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 7399 - 7454
Alignment:
Q  244 aaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagtttct 299  Q
    |||||||||||| ||||||||||||||| |||| ||||| ||||||||||||||||    
T  7399 aaaaggatcaaagttgcaaaggggctaaatcttagggggtcaaaattgtagtttct 7454  T

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Target: scaffold0320 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 305
Target Start/End: Complemental strand, 19665 - 19544
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccg-gtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggc 283  Q
    |||||| | |||||||||| ||||| |||||||||||| ||||    |||||||||||  |||| |||||||  |||||||||| ||| |||| ||||      
T  19665 ttaattaattaattacacatgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaatgatcaaagatgcaaaggggttaaatcttaggggat 19566  T
Q  284 caaaattgtagtttctatactt 305  Q
    |||||||||||||| |||||||    
T  19565 caaaattgtagtttttatactt 19544  T

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Target: scaffold0321 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 297
Target Start/End: Complemental strand, 18896 - 18792
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgac-cggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    ||||||||||||||||||||||  |  || ||||| ||| |||||||| ||||||||| ||  |||| ||||||| |||||||| || || |||||||||    
T  18896 taattacacacgtggcatgccaaatcagcgttgactcggccaaaattgctaaaaaggaccactattgtaaaggggttaattcttaggaggtcaaaattgt 18797  T
Q  293 agttt 297  Q
    |||||    
T  18796 agttt 18792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 303
Target Start/End: Complemental strand, 1607 - 1497
Alignment:
Q  194 taattacacacgtggcatgccacgtaggcattgacc-ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgt 292  Q
    |||||||||| |||||||||||  |  ||||||||  ||||||||||||  ||||||| ||||  |||||| ||||||| |||| ||||| ||||||| |    
T  1607 taattacacatgtggcatgccaaatcagcattgacttggtcaaaattgaccaaaaggaccaaagatgcaaatgggctaaatcttagggggtcaaaattat 1508  T
Q  293 agtttctatac 303  Q
    ||||| |||||    
T  1507 agtttttatac 1497  T

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Target: scaffold0586 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 6509 - 6457
Alignment:
Q  185 ttaattcaataattacacacgtggcatgccacgtaggcattgaccggtcaaaa 237  Q
    |||||| |||||||||| |||||| | ||||||||| ||||||||||||||||    
T  6509 ttaattaaataattacatacgtgggacgccacgtagacattgaccggtcaaaa 6457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 49403 - 49470
Alignment:
Q  230 ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagttt 297  Q
    |||||||||||   ||||||| |||| ||||||||| ||||| |||| ||||| ||||||||||||||    
T  49403 ggtcaaaattggccaaaaggaccaaagttgcaaaggagctaaatcttagggggtcaaaattgtagttt 49470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 60221 - 60148
Alignment:
Q  230 ggtcaaaattgataaaaaggatcaaaattgcaaaggggctaattcttggggggccaaaattgtagtttctatac 303  Q
    ||||||||||||  |||| || ||||  |||||||||||||| || | ||||| |||||||||||||| |||||    
T  60221 ggtcaaaattgaccaaaaagaccaaagatgcaaaggggctaaatcatagggggtcaaaattgtagtttttatac 60148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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