View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13514_high_1 (Length: 588)
Name: NF13514_high_1
Description: NF13514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13514_high_1 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 261 - 588
Target Start/End: Complemental strand, 7446360 - 7446033
Alignment:
| Q |
261 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaannnnnnnaagactgaagtactcttcttcaagttt |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7446360 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaatttttttaagactgaagtactcttcttcaagttt |
7446261 |
T |
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| Q |
361 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7446260 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
7446161 |
T |
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| Q |
461 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttggcactgttttctccacctt |
560 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7446160 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttagcactgttttctccacctt |
7446061 |
T |
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| Q |
561 |
tgttcttcttactacgcttgcgtcttgg |
588 |
Q |
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| T |
7446060 |
tgttcttcttactacgcttgcgtcttgg |
7446033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 261 - 588
Target Start/End: Complemental strand, 7461304 - 7460977
Alignment:
| Q |
261 |
gaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaannnnnnnaagactgaagtactcttcttcaagttt |
360 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7461304 |
gaagaggaagaaagaggtataccttggtttcaaggagacacttctcaagaatggtggattcatgattttttttaagactgaagtactcttcttcaagttt |
7461205 |
T |
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| Q |
361 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
460 |
Q |
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| T |
7461204 |
cttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactca |
7461105 |
T |
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| Q |
461 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttggcactgttttctccacctt |
560 |
Q |
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| T |
7461104 |
agtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttagcactgttttctccacctt |
7461005 |
T |
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| Q |
561 |
tgttcttcttactacgcttgcgtcttgg |
588 |
Q |
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| T |
7461004 |
tgttcttcttactacgcttgcgtcttgg |
7460977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 7446601 - 7446419
Alignment:
| Q |
17 |
acttttttagagctaaacgagaatagaaaaaatatcaagaccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactgctgttgtgtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7446601 |
acttttttagagctaaacgagaatagaaaaaatatcaagaccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactggtgttgtgtt |
7446502 |
T |
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| Q |
117 |
gagacaaataaaaacaaaacactatagtaatataatattgttggaattaaaaaatttatgtctagttataatccaatcaactg |
199 |
Q |
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| T |
7446501 |
gagacaaataaaaacaaaacactatagtaatataatattgttggaattaaaaaatttatgtcaagttataatccaatccactg |
7446419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 37 - 161
Target Start/End: Complemental strand, 7461569 - 7461445
Alignment:
| Q |
37 |
gaatagaaaaaatatcaagaccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactgctgttgtgttgagacaaataaaaacaaaac |
136 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
7461569 |
gaataaaaaaaaaatcaagaccaccagagaagaaacatggtagcatgcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaac |
7461470 |
T |
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| Q |
137 |
actatagtaatataatattgttgga |
161 |
Q |
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| T |
7461469 |
actatagtaatataatattgttgga |
7461445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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