View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13514_low_2 (Length: 480)
Name: NF13514_low_2
Description: NF13514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13514_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 16 - 420
Target Start/End: Original strand, 33456220 - 33456629
Alignment:
| Q |
16 |
tcaataaccaaaccataatacatcatgaagaaaaagttgttccacggagaactagttatttgctcaaggatcacctagtaatatgacgtttcagtcatta |
115 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
33456220 |
tcaataaccaagccataatacatcatgaagaaaaagttgttccatggagaactagttatttgctcaaggatcacctagtaaaacgacgtttcagtcatta |
33456319 |
T |
|
| Q |
116 |
gagttttacattaaacagataccagggctaaggaaaacatagaacctaacataacacagtattatccttataaattaagacagagtaaacacaataaaac |
215 |
Q |
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| T |
33456320 |
gagttttacattaaacagataccagggctaaggaaaacatagaacctaacataacacagtattatccctataaattaagacaaagttcacacaataaaac |
33456419 |
T |
|
| Q |
216 |
aagttaaccatataccttcttagcaacagtttcattgcctttcttccccttgaaaagtttatccatcaataaatggagataatgtccaaacggtcctgaa |
315 |
Q |
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| T |
33456420 |
aagttaactatataccttcttagcaacagtttcattgcctttcttccccttgaaaagtttatccatcaataaatggagataatgtccaaacggtcctgaa |
33456519 |
T |
|
| Q |
316 |
taggcgaaaccatagagctgcgaaataatttgattttaaatttccacagaccttcaaaatccaactactac-----caaactataataacttctacttca |
410 |
Q |
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| T |
33456520 |
taggcgaaaccatagagctgcgaaataatttgattttaaattttcacagaccttcaaaattcaactactaccatatcaaactataataacttctacttca |
33456619 |
T |
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| Q |
411 |
tctataacat |
420 |
Q |
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| T |
33456620 |
tctataacat |
33456629 |
T |
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