View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13514_low_3 (Length: 443)
Name: NF13514_low_3
Description: NF13514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13514_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 19 - 443
Target Start/End: Original strand, 53067505 - 53067929
Alignment:
| Q |
19 |
agttccctacctcacttggtcccttattaattaattggatggatattgttgagatgttattttaagaatattgttgagatgttattcaacactttgtatg |
118 |
Q |
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| T |
53067505 |
agttccctacctcactaggtcccttattaattaattggatggatattgttgagatgtttttttaagaatattgttgagatgttattcaacactttgtatg |
53067604 |
T |
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| Q |
119 |
tctaatcaatgagagatgaatccatttcacacccttctcctttcgtaacagtaaaaccatcgttcattgtcctcctgatggcttaatttctcatggcttg |
218 |
Q |
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| T |
53067605 |
tctaatcaatgagagatgaatccatttcacacccttctcctttcgtaacagtaaaaccaccgttcattgtcctcctgatggcttaatttctcatggcttg |
53067704 |
T |
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| Q |
219 |
atgggaaggatatcaaattaacatccttctcataatcaataattgttgggtaatacataaatacaaattaacacccttctcatcacacccttttcctatc |
318 |
Q |
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| T |
53067705 |
atgggaaggatatcaaattaacatccttctcataatcaataattgttgggtaatacataaatacaaattaacacccttctcatcacacccttttcctatc |
53067804 |
T |
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| Q |
319 |
aaattaacaatattctttcgtaattcgatatcaaattaacatcattctcatgaatccattattgttgagatgaagccatgactgtctaatcaataatttc |
418 |
Q |
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| T |
53067805 |
aaattaacaatattctttcgtaattcgatatcaaattaacatccttctcatgaatccattattgttgagatgaagccatgactgtctaatcaataatttc |
53067904 |
T |
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| Q |
419 |
tcatggcgagatgttatttcacacc |
443 |
Q |
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| T |
53067905 |
tcatggcgagatgttatttcacacc |
53067929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 5361763 - 5361820
Alignment:
| Q |
19 |
agttccctacctcacttggtcccttattaattaattggatggatattgttgagatgtt |
76 |
Q |
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| T |
5361763 |
agttcccttcctcccttggtctcttattaattaattgaatggatattgttgaggtgtt |
5361820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 5361871 - 5361934
Alignment:
| Q |
127 |
atgagagatgaatccatttcaca-cccttctcctttcgtaacagtaaaaccatcgttcattgtc |
189 |
Q |
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| T |
5361871 |
atgagcgatgaatccatttcacaccccttcacctttcgtaatagtaaaaccacccttcattgtc |
5361934 |
T |
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