View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13515_high_1 (Length: 417)
Name: NF13515_high_1
Description: NF13515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13515_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 35159522 - 35159124
Alignment:
| Q |
1 |
atgtacatcattcacacacaaagagagtagtagttttcatttttccattgatgagataaccatcacagtagatgacatgtcatgtttgttgcacttgcct |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35159522 |
atgtacatcattcacacacaaagagagtagtaattttcatttttccattgatgagataaccatcacagtagatgacatgtcatgtttgttgcacttgcct |
35159423 |
T |
|
| Q |
101 |
atccacagtaggttgatgaaacattcttcgccattgtccaaagaagacggcgttgagttgttaggtgagttacttggtcgggacttagaagatttcataa |
200 |
Q |
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| T |
35159422 |
atccacagtaggttgatgaaacattcttcgccattgtccaaagaacacgacgttgagttgttaggtgagttacttggtcgggacttagaagatttcataa |
35159323 |
T |
|
| Q |
201 |
tgagtgggaaaggttgaaagatgttcacataacctttagctggctacatccagtcttcctcgatcatcataccaaaaccttgcagttcgaaagtgaacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35159322 |
tgagtgggaaaggttgaaagatgttcacataacctttagctggctacatccagtcttcctcgatcatcataccaaaaccttgcagttcgaaagtgaacca |
35159223 |
T |
|
| Q |
301 |
gggtcgaatgctgtcagaaatggacacacgactaggtgtatcaaaacttacctactttacctatttggatgcactatctttaccgacaaggtcaacaat |
399 |
Q |
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|||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35159222 |
gggtcgaaggccgtcagaaatggacacatgactaggtgtatcaaaacttacctactttacctatttggatgcactatctttaccgacaaggtcaacaat |
35159124 |
T |
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