View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13515_low_1 (Length: 423)

Name: NF13515_low_1
Description: NF13515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13515_low_1
NF13515_low_1
[»] chr1 (3 HSPs)
chr1 (228-380)||(46249127-46249279)
chr1 (111-182)||(46249325-46249396)
chr1 (6-45)||(46249462-46249501)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 6e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 228 - 380
Target Start/End: Complemental strand, 46249279 - 46249127
Alignment:
Q  228 tttgtagtaatggaaaacaaggtggaggatcccaatgggatttctaaatttaagatatcggagccgttgagagaaaagttgaaggaaaagggaattgagt 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46249279 tttgtagtaatggaaaacaaggtggaggatcccaatgggatttctaaatttaagatatcggagccgttgagagaaaagttgaaggaaaagggaattgagt 46249180  T
Q  328 cattgtttcctattcaggctatgacttttgatatcattcttcaaggttgtgat 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46249179 cattgtttcctattcaggctatgacttttgatatcattcttcaaggttgtgat 46249127  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 46249396 - 46249325
Alignment:
Q  111 cgtaaggcttccgtgttatagacaatgacgacgaccaatagagacgataatgagaatagtttagagttggat 182  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46249396 cgtaaggcttccatgttatagacaatgacgacgaccaatggagacgataatgagaatagtttagagttggat 46249325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 46249501 - 46249462
Alignment:
Q  6 aaaaaacccaatctcaaaccgaaccagaaggttcaatctc 45  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46249501 aaaaaacccaatctcaaaccgaaccagaaggttcaatctc 46249462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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