View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13516_high_11 (Length: 319)

Name: NF13516_high_11
Description: NF13516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13516_high_11
NF13516_high_11
[»] chr1 (1 HSPs)
chr1 (11-304)||(28940033-28940327)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 28940327 - 28940033
Alignment:
Q  11 cacagaccaactctgccatatagaaattcttatgtgcttttccagctaaatttgtttctcatatatgacacactcactgaattccaaaacacattagact 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28940327 cacagaccaactctgccatatagaaattcttatgtgcttttccagctaaatttgtttctcatatatgacacactcactgaattccaaaacacattagact 28940228  T
Q  111 catatttaagctacatagtgccaacaaaacacacaccatcatattctctgaaacttgcatgagaaaccatcttttcaagatacttacatctctctcagtt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28940227 catatttaagctacatagtgccaacaaaacacacaccatcatattctctgaaacttgcatgagaaaccatcttttcaagatacttacatctctctcagtt 28940128  T
Q  211 agtttaccccatacccttttgg-ttttacctcaaaagtttgttcttatccaaatagtctttgcttctgaaggctctataaatatacacacaaatt 304  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28940127 agtttaccccatacccttttggtttttacctcaaaagtttgttcttatccaaatagtgtttgcttctgaaggctctataaatatacacacaaatt 28940033  T

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