View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13516_high_12 (Length: 314)
Name: NF13516_high_12
Description: NF13516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13516_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 88 - 296
Target Start/End: Original strand, 52481058 - 52481266
Alignment:
| Q |
88 |
gactcttttggttggatgttgcagaaagaaaaggagaaacttcacaagaaaatccatgacctacagagaggtcttgatgcaaaacaagcattggaattgg |
187 |
Q |
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| T |
52481058 |
gactcttttggttggatgttgcagaaagaaaaggagaaacttcacaagaaaatccatgacctacagagaggtcttgatgcaaaacaagcattggaattgg |
52481157 |
T |
|
| Q |
188 |
aaattgaacagttgagagaagctttcgaggtaaagaaaaaactggaggcaatcgaaatggagctgcaggaaaaagaagagggccttcaagacatggatga |
287 |
Q |
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| T |
52481158 |
aaattgaacagttgagagaagctttcgaggtaaagaaaaaactggaggcaatcgaaatggagctgcaggaaaaagaagagggccttcaagacatggatga |
52481257 |
T |
|
| Q |
288 |
tcttcaacg |
296 |
Q |
| |
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||||||||| |
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| T |
52481258 |
tcttcaacg |
52481266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 82 - 220
Target Start/End: Complemental strand, 16408333 - 16408195
Alignment:
| Q |
82 |
tttgatgactcttttggttggatgttgcagaaagaaaaggagaaacttcacaagaaaatccatgacctacagagaggtcttgatgcaaaacaagcattgg |
181 |
Q |
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||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| |
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| T |
16408333 |
tttgaggactattttggttgtatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgcaaaacaagcattgg |
16408234 |
T |
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| Q |
182 |
aattggaaattgaacagttgagagaagctttcgaggtaa |
220 |
Q |
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| T |
16408233 |
agttggaagttgaacggctaagaggagctttccaggtaa |
16408195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 52472334 - 52472415
Alignment:
| Q |
9 |
gaagaatataaggcacacatttgattttcctttcatgtacaatattttattcagttacatttatccacataggtttgatgac |
90 |
Q |
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| T |
52472334 |
gaagaacataaggcacgcatttgattttcctttcatgtacaatatttaattcagttacatttatccacataggtttgatgac |
52472415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 16408162 - 16408114
Alignment:
| Q |
220 |
aagaaaaaactggaggcaatcgaaatggagctgcaggaaaaagaagagg |
268 |
Q |
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||||||||| |||| |||||| |||||||||||||||||| ||||||| |
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| T |
16408162 |
aagaaaaaattggaagcaatcagaatggagctgcaggaaaaggaagagg |
16408114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 40751559 - 40751771
Alignment:
| Q |
9 |
gaagaatataaggcacacatttgattttcctttcatgtacaatattttattcagttacatttatccacataggttt-gatgactcttttggttggatgtt |
107 |
Q |
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|||||| ||||||||| ||||| |||||||| | || ||| | ||| |||||||| ||| ||| || ||||||| || |||||||||||||||||||| |
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| T |
40751559 |
gaagaacataaggcacgcatttcattttcctattatcgacagtttttaattcagtttcatgtatatacttaggttttgaggactcttttggttggatgtt |
40751658 |
T |
|
| Q |
108 |
gcagaaagaaaaggagaaacttcacaagaaaatccatgacctacagagaggtcttgatgcaaaacaagcattggaattggaaattgaacagttgagagaa |
207 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||||| || |||||||||||||||||||||||||| || |||||| ||| || | |
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| T |
40751659 |
gcagaaagaaaaggagaaacttcacaagaaaattcatgacctggagagaggactggatgcaaaacaagcattggaattggagatagaacagctgaaagga |
40751758 |
T |
|
| Q |
208 |
gctttcgaggtaa |
220 |
Q |
| |
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|||||| |||||| |
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| T |
40751759 |
gctttccaggtaa |
40751771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 41477304 - 41477516
Alignment:
| Q |
9 |
gaagaatataaggcacacatttgattttcctttcatgtacaatattttattcagttacatttatccacat-aggtttgatgactcttttggttggatgtt |
107 |
Q |
| |
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|||||| |||||||| |||| | |||||||| || |||| | ||| ||||||| |||||||| || | || ||||| |||||||||||||||||||| |
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| T |
41477304 |
gaagaacataaggcaagtatttcactttccttttatctacagtttttaattcagtaacatttatatacttcagttttgaggactcttttggttggatgtt |
41477403 |
T |
|
| Q |
108 |
gcagaaagaaaaggagaaacttcacaagaaaatccatgacctacagagaggtcttgatgcaaaacaagcattggaattggaaattgaacagttgagagaa |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| ||||| || |||| | ||| || | |
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| T |
41477404 |
gcagaaagaaaaggagaaacttcacaagaaaattcatgacctggagagaggacttgatgcaaaacaagcattggagttggagatagaacggctgaaagga |
41477503 |
T |
|
| Q |
208 |
gctttcgaggtaa |
220 |
Q |
| |
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|||||| |||||| |
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| T |
41477504 |
gctttccaggtaa |
41477516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 41470503 - 41470603
Alignment:
| Q |
89 |
actcttttggttggatgttgcagaaagaaaaggagaaacttcacaagaaaatccatgacctacagagaggtcttgatgcaaaacaagcattggaattgga |
188 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||| |
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| T |
41470503 |
actcttttggttggatgatgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggtcttggtgcaaaacaaacattggaattgga |
41470602 |
T |
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| Q |
189 |
a |
189 |
Q |
| |
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| |
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| T |
41470603 |
a |
41470603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 41484390 - 41484490
Alignment:
| Q |
88 |
gactcttttggttggatgttgcagaaagaaaaggagaaacttcacaagaaaatccatgacctacagagaggtcttgatgcaaaacaagcattggaattgg |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| |||||||| ||||| ||||||||||||| |
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| T |
41484390 |
gactcttttggttggatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgctaaacaggcattggaattgg |
41484489 |
T |
|
| Q |
188 |
a |
188 |
Q |
| |
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| |
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| T |
41484490 |
a |
41484490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 41477549 - 41477597
Alignment:
| Q |
220 |
aagaaaaaactggaggcaatcgaaatggagctgcaggaaaaagaagagg |
268 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
41477549 |
aagaaaaaactggaggaaatcaaaatggagctgcaggaaaaagaagagg |
41477597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 40751804 - 40751852
Alignment:
| Q |
220 |
aagaaaaaactggaggcaatcgaaatggagctgcaggaaaaagaagagg |
268 |
Q |
| |
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||||||||| |||| |||||| |||||||||||||||||| ||||||| |
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| T |
40751804 |
aagaaaaaattggaagcaatcagaatggagctgcaggaaaaggaagagg |
40751852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 41484555 - 41484603
Alignment:
| Q |
220 |
aagaaaaaactggaggcaatcgaaatggagctgcaggaaaaagaagagg |
268 |
Q |
| |
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||||||||| |||| |||||| |||||||||||||||||| ||||||| |
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| T |
41484555 |
aagaaaaaattggaagcaatcagaatggagctgcaggaaaaggaagagg |
41484603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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