View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13516_high_3 (Length: 462)

Name: NF13516_high_3
Description: NF13516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13516_high_3
NF13516_high_3
[»] chr7 (3 HSPs)
chr7 (129-462)||(7165388-7165730)
chr7 (23-128)||(7165256-7165361)
chr7 (346-428)||(31822287-31822369)
[»] scaffold0311 (3 HSPs)
scaffold0311 (346-462)||(13462-13576)
scaffold0311 (393-436)||(15088-15131)
scaffold0311 (302-355)||(15022-15075)
[»] chr4 (1 HSPs)
chr4 (346-428)||(27737832-27737914)
[»] chr6 (2 HSPs)
chr6 (340-420)||(20985916-20985996)
chr6 (346-409)||(8915517-8915580)
[»] chr2 (2 HSPs)
chr2 (346-388)||(18776813-18776855)
chr2 (317-355)||(18776764-18776802)
[»] chr3 (2 HSPs)
chr3 (293-355)||(36472289-36472351)
chr3 (391-428)||(36472548-36472585)


Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 129 - 462
Target Start/End: Original strand, 7165388 - 7165730
Alignment:
Q  129 gataacatgaattaatgaatagatcgcacaatatgtcagaccccctcttaacgtcttatctaataacataaggatcttttatttgatgatcaatttctca 228  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7165388 gataacatgaattaatgaatagatcgcacaatatgtcagaccctctcttaacgtcttatctaataacataaggatcttttatttgatgatcaatttctca 7165487  T
Q  229 tcagaaaaaattaatgagtaaatttgtgttacgttcattgttaaatctctctagacggaaactattaaggtttttagcatttagtggcttaattagaaat 328  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |    
T  7165488 tcaggaaaaattaatgagtaaatttgtgttacgttcatggttaaatctctctaggcggaaactattaagatttttagcatttagtggcttaattagaatt 7165587  T
Q  329 agttaatagttagtta---------caagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattttctatctttt 419  Q
    ||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7165588 agttaatagttagttagtggagtttgaagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattttctatctttt 7165687  T
Q  420 aatcaaaatatttctcttgataatcttttcttaatcaaagcct 462  Q
     |||||||||||||||||| |||||||||||||||||||||||    
T  7165688 gatcaaaatatttctcttgttaatcttttcttaatcaaagcct 7165730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 7165256 - 7165361
Alignment:
Q  23 ccttctatgccaatctataggtcttctcctagtgatttaataccttcaaaggaccactccctgcaactgcaagcacatcattacaaccttgaaattctca 122  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7165256 ccttctatgccaatctataggtcttctcctagtgatttaacaccttcaaaggaccactccctgcaactgcaagcacatcattacaaccttgaaattctca 7165355  T
Q  123 tctata 128  Q
    ||||||    
T  7165356 tctata 7165361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 346 - 428
Target Start/End: Complemental strand, 31822369 - 31822287
Alignment:
Q  346 aagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattttctatcttttaatcaaaat 428  Q
    |||||||||||||||||||||||||  || |||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  31822369 aagttagttacacaattggttagtctgattagtcctataaatatggacaagtatgtactcattttctatcttttgatcaaaat 31822287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 86; Significance: 6e-41; HSPs: 3)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 346 - 462
Target Start/End: Original strand, 13462 - 13576
Alignment:
Q  346 aagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattttctatcttttaatcaaaatatttctcttgataatct 445  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||||    
T  13462 aagttagttacacaattggttagtctaattagtcctataaatatggactagtatgtactcattttctatcttttgatcaaaatatttctct--gtaatct 13559  T
Q  446 tttcttaatcaaagcct 462  Q
    ||||| |||||||||||    
T  13560 tttctcaatcaaagcct 13576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 436
Target Start/End: Original strand, 15088 - 15131
Alignment:
Q  393 ctagtatgtactcattttctatcttttaatcaaaatatttctct 436  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  15088 ctagtatgtactcattttctatcttttgatcaaaatatttctct 15131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 15022 - 15075
Alignment:
Q  302 ttagcatttagtggcttaattagaaatagttaatagttagttacaagttagtta 355  Q
    |||| ||||||||  ||||||||   ||||||||||||||||||||||||||||    
T  15022 ttaggatttagtgtgttaattagggttagttaatagttagttacaagttagtta 15075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 346 - 428
Target Start/End: Original strand, 27737832 - 27737914
Alignment:
Q  346 aagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattttctatcttttaatcaaaat 428  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  27737832 aagttagttacacaattggttagtccaataagtcctataaataaggactagtatgtactcattttctatcttttgatcaaaat 27737914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 340 - 420
Target Start/End: Complemental strand, 20985996 - 20985916
Alignment:
Q  340 agttacaagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattttctatctttta 420  Q
    ||||| |||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  20985996 agttagaagttagttacacagtttgttagtccattaagtcctataaatatggactagtatgtactcatttgctatctttta 20985916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 346 - 409
Target Start/End: Original strand, 8915517 - 8915580
Alignment:
Q  346 aagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattt 409  Q
    |||||| ||| |||||||||||||||| ||||||||||||||| |||||| |||||||||||||    
T  8915517 aagttaattaaacaattggttagtccattaagtcctataaataaggactattatgtactcattt 8915580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 18776813 - 18776855
Alignment:
Q  346 aagttagttacacaattggttagtccaataagtcctataaata 388  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  18776813 aagttagttacacaattggttagtccattaagtcctataaata 18776855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 18776764 - 18776802
Alignment:
Q  317 ttaattagaaatagttaatagttagttacaagttagtta 355  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  18776764 ttaattaggattagttaatagttagttacaagttagtta 18776802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 36472289 - 36472351
Alignment:
Q  293 ttaaggtttttagcatttagtggcttaattagaaatagttaatagttagttacaagttagtta 355  Q
    ||||| || |||| ||||||||  |||||||||  ||||||||||||||||||||||||||||    
T  36472289 ttaagattcttaggatttagtgtgttaattagagttagttaatagttagttacaagttagtta 36472351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 428
Target Start/End: Original strand, 36472548 - 36472585
Alignment:
Q  391 gactagtatgtactcattttctatcttttaatcaaaat 428  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  36472548 gactagtatgtactcattttccatcttttgatcaaaat 36472585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University