View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13516_high_8 (Length: 369)
Name: NF13516_high_8
Description: NF13516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13516_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 21 - 332
Target Start/End: Complemental strand, 15514252 - 15513941
Alignment:
| Q |
21 |
tcttgaacgacatggtattgttcttaacatacttgtgtacgttgatgacttgatcattgcaggtaatgactcggcagcaattgttcatttcaaagcttgt |
120 |
Q |
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| T |
15514252 |
tcttgagcgacatggtattgttcttaacatacttgtgtacgttgatgacttgatcattgcaggtaatgactcggcatcaattgctcatttcaaagcttgt |
15514153 |
T |
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| Q |
121 |
cttagcacttgctttcacaagaaaaatttgggagtattgaaatattttcttggtcttgagatttctcgtcggcctgatggtttgtttctgtctcaattga |
220 |
Q |
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| T |
15514152 |
cttagcacttgctttcacaagaaaaatttgggagtattgaaatattttcttggtcttgagatttctcgtcggcctgatggtttgtttctgtctcaacgga |
15514053 |
T |
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| Q |
221 |
aatatgcgttggatatcatctccgaatttggtttacttggtgcaaaaccttgtgattttcccatggaacaatatcaccaattagctcttgatacaagtct |
320 |
Q |
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| T |
15514052 |
aatatgcactggatatcatctcggaatctggtttacttggtgcaaaaccttgggattttcccatggaacaaaatcaccaattagctcttgatacaagtct |
15513953 |
T |
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| Q |
321 |
caaccttgatca |
332 |
Q |
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| T |
15513952 |
caaccttgatca |
15513941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 363
Target Start/End: Complemental strand, 15513893 - 15513860
Alignment:
| Q |
330 |
tcaccattactcgtccagaactttgtgatgatgt |
363 |
Q |
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| T |
15513893 |
tcaccattactcgtccagaactttgttatgatgt |
15513860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 290
Target Start/End: Original strand, 20776659 - 20776885
Alignment:
| Q |
64 |
gatgacttgatcattgcaggtaatgactcggcagcaattgttcatttcaaagcttgtcttagcacttgctttcacaagaaaaatttgggagtattgaaat |
163 |
Q |
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| T |
20776659 |
gatgacttgatcattgcaggaaatgattctggctcaatttctaatttcaaggcttatctgagcacttgctttcacatgaaagatcttggtgtgctgaagt |
20776758 |
T |
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| Q |
164 |
attttcttggtcttgagatttctcgtcggcctgatggtttgtttctgtctcaattgaaatatgcgttggatatcatctccgaatttggtttacttggtgc |
263 |
Q |
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| T |
20776759 |
actttcttggtattgaggtagctaggggaccagatggcttgtttctttctcaacgtaaatacgcgcttgatataatttctgaatctggtttacttggaac |
20776858 |
T |
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| Q |
264 |
aaaaccttgtgattttcccatggaaca |
290 |
Q |
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| T |
20776859 |
aaaaccttgtgattttcccatggaaca |
20776885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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