View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13516_low_13 (Length: 319)
Name: NF13516_low_13
Description: NF13516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13516_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 28940327 - 28940033
Alignment:
| Q |
11 |
cacagaccaactctgccatatagaaattcttatgtgcttttccagctaaatttgtttctcatatatgacacactcactgaattccaaaacacattagact |
110 |
Q |
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| T |
28940327 |
cacagaccaactctgccatatagaaattcttatgtgcttttccagctaaatttgtttctcatatatgacacactcactgaattccaaaacacattagact |
28940228 |
T |
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| Q |
111 |
catatttaagctacatagtgccaacaaaacacacaccatcatattctctgaaacttgcatgagaaaccatcttttcaagatacttacatctctctcagtt |
210 |
Q |
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| T |
28940227 |
catatttaagctacatagtgccaacaaaacacacaccatcatattctctgaaacttgcatgagaaaccatcttttcaagatacttacatctctctcagtt |
28940128 |
T |
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| Q |
211 |
agtttaccccatacccttttgg-ttttacctcaaaagtttgttcttatccaaatagtctttgcttctgaaggctctataaatatacacacaaatt |
304 |
Q |
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| T |
28940127 |
agtttaccccatacccttttggtttttacctcaaaagtttgttcttatccaaatagtgtttgcttctgaaggctctataaatatacacacaaatt |
28940033 |
T |
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