View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13516_low_17 (Length: 246)
Name: NF13516_low_17
Description: NF13516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13516_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 5014605 - 5014833
Alignment:
| Q |
19 |
agttcctttctgatcaaaaggacactccaacaactacatgaat--------tacaatccctttgaacacgttaacaccatctaagaaacaacatacataa |
110 |
Q |
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| T |
5014605 |
agttcctttctgatcaaaaggacactccaacaactacatgaatatcactattacaatccctttgaatacgt-aacaccatctaagaaacaacatacataa |
5014703 |
T |
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| Q |
111 |
tgcataccaagttttttacattaacacatgatcatcaatcatgaaaccactagagagaaactcatgaacacatacatccaaacatggttctaaattgtgg |
210 |
Q |
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| T |
5014704 |
tgcataccaagttttttacattaacacatgatcatcaatcatgaaaccactagagagaaactcatgaacacatacatccaaacatggttctaaattgtgg |
5014803 |
T |
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| Q |
211 |
ccacattataaagggttttgaggtctctgc |
240 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5014804 |
ccacattataaagggttttgaggtctctgc |
5014833 |
T |
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