View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13516_low_3 (Length: 579)
Name: NF13516_low_3
Description: NF13516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13516_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 262
Target Start/End: Original strand, 23258158 - 23258399
Alignment:
| Q |
21 |
aattcggagttgacatgtcatacgaagaagatgctgttgagggaatggattgtgaataggaagagttgttagtagtaaacatatgtatgtgttggagaga |
120 |
Q |
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| T |
23258158 |
aattcggagttgacatgtcatacgaagaagatgctgttgagggaatggattgtgaataggaagagttgttagtagtaaacatatgtatgtgttggagaga |
23258257 |
T |
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| Q |
121 |
gtggaaaattgttttaagaggaaaagtggcaattggagagagagttgtttttaagagaatgaagagtaaggtgtgttatatatatagggaagcatagttg |
220 |
Q |
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| T |
23258258 |
gtggaaaattgttttaagaggaaaagtggcaattggagagagagttgtttttaagagaatgaagagtaaggtgtgttatatatatagggaagcatagttg |
23258357 |
T |
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| Q |
221 |
agtttgaaggaaagaataaggtaacaggtagagtatttgtaa |
262 |
Q |
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| T |
23258358 |
agtttgaaggaaagaataaggtaacaggtagagtatttgtaa |
23258399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 388 - 564
Target Start/End: Original strand, 23258522 - 23258699
Alignment:
| Q |
388 |
cacttggctcaaaatgaacaaggttattaaaatatcctctttctattttattttatttta--aggcatgttatcaaaatatctattgctgcgtcactata |
485 |
Q |
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| T |
23258522 |
cacttggctcaaaatgaacaaggttatcaaaatatcctctttctattttattttattttataaggcatgttatgaaaatatctac-gctgcgtcactata |
23258620 |
T |
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| Q |
486 |
caaggttattatatgattcagaggaatttactctttttggctctccatccctttcaaacccacatgttattgattgcgc |
564 |
Q |
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| T |
23258621 |
caaggttattatatgattcagaggaatttactatttttggctctccatccctttcaaacccacatgttactgattgcgc |
23258699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 57 - 248
Target Start/End: Original strand, 23247806 - 23247995
Alignment:
| Q |
57 |
ttgagggaatggattgtgaataggaagagttgttagtagtaaacatatgtatgtgttggagagagtggaaaattgttttaagaggaaaagtggcaattgg |
156 |
Q |
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|||||| |||||| |||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||| ||||| ||||| ||||||| |||||| |
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| T |
23247806 |
ttgaggaaatggagtgtgaataggaagagttgttagtactaatcatatgtatgtgttggatagagtggaaaatggttttgagaggtaaagtgggaattgg |
23247905 |
T |
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| Q |
157 |
agagagagttgtttttaagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgagtttgaaggaaagaataaggtaacagg |
248 |
Q |
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| T |
23247906 |
agagag--tttgttttaagagaatgaagagtaaggtgtgttatatatatagggaagcattgttgtgtttgaaggaaagaataaggtaacagg |
23247995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 57 - 248
Target Start/End: Original strand, 23252218 - 23252407
Alignment:
| Q |
57 |
ttgagggaatggattgtgaataggaagagttgttagtagtaaacatatgtatgtgttggagagagtggaaaattgttttaagaggaaaagtggcaattgg |
156 |
Q |
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| T |
23252218 |
ttgaggaaatggagtgtgaataggaagagttgttagtacttatcatatgtatgtgttggatagagtggaaaatggttttgagaggtaaagtggtaattgg |
23252317 |
T |
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| Q |
157 |
agagagagttgtttttaagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgagtttgaaggaaagaataaggtaacagg |
248 |
Q |
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| T |
23252318 |
agagag--tttgttttaagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgtgtttgaaggaaagaataaggcaacagg |
23252407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 153 - 260
Target Start/End: Original strand, 23266804 - 23266911
Alignment:
| Q |
153 |
ttggagagagagttgtttttaagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgagtttgaaggaaagaataaggtaacaggtaga |
252 |
Q |
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| T |
23266804 |
ttggagagatagttgtttttaagagaatgaagagtaaggtgtgttacatatatagtgaagcatacttggttttgaaggaaagaataaggtaacaggcaga |
23266903 |
T |
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| Q |
253 |
gtatttgt |
260 |
Q |
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| T |
23266904 |
gtgtttgt |
23266911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 23266736 - 23266812
Alignment:
| Q |
44 |
gaagaagatgctgttgagggaatggattgtgaataggaagagttgttagtagtaaacatatgtatgtgttggagaga |
120 |
Q |
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| T |
23266736 |
gaagaagatgcttctgaggaaatggagtgtgaataggaagagttgttagtagtaaacatatgtatgtgttggagaga |
23266812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 326
Target Start/End: Original strand, 23258418 - 23258461
Alignment:
| Q |
283 |
agtgagctatttcccaagttggaggctttgtgattggttatcaa |
326 |
Q |
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| T |
23258418 |
agtgagctatttcccaagttggaggctgtgtgattggttatcaa |
23258461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 326
Target Start/End: Original strand, 23266934 - 23266974
Alignment:
| Q |
286 |
gagctatttcccaagttggaggctttgtgattggttatcaa |
326 |
Q |
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| T |
23266934 |
gagctatttcctaagttggaggctttgtgattggttatcaa |
23266974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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