View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13516_low_6 (Length: 391)

Name: NF13516_low_6
Description: NF13516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13516_low_6
NF13516_low_6
[»] chr8 (15 HSPs)
chr8 (2-173)||(23238994-23239164)
chr8 (239-375)||(23238788-23238924)
chr8 (249-375)||(23233389-23233516)
chr8 (1-49)||(14012603-14012653)
chr8 (1-48)||(29937203-29937251)
chr8 (1-47)||(14011092-14011139)
chr8 (14-49)||(39432396-39432431)
chr8 (1-49)||(216201-216250)
chr8 (1-49)||(692761-692810)
chr8 (1-49)||(696970-697019)
chr8 (1-49)||(729824-729873)
chr8 (1-49)||(853719-853768)
chr8 (15-47)||(2800012-2800044)
chr8 (15-47)||(10292345-10292377)
chr8 (2-49)||(24572906-24572954)
[»] chr7 (14 HSPs)
chr7 (270-374)||(23123081-23123183)
chr7 (15-50)||(14818435-14818470)
chr7 (15-50)||(15265433-15265468)
chr7 (276-335)||(23098544-23098603)
chr7 (14-49)||(24440983-24441018)
chr7 (1-47)||(32514690-32514737)
chr7 (1-47)||(4169069-4169117)
chr7 (1-47)||(21285407-21285455)
chr7 (1-49)||(38363151-38363200)
chr7 (1-49)||(45267980-45268029)
chr7 (1-48)||(8766865-8766913)
chr7 (267-299)||(16199767-16199799)
chr7 (1-48)||(17305444-17305492)
chr7 (15-47)||(41139080-41139112)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-49)||(34087-34136)
[»] chr5 (5 HSPs)
chr5 (14-47)||(3536004-3536037)
chr5 (1-51)||(11246548-11246599)
chr5 (13-47)||(9196151-9196185)
chr5 (14-47)||(22687937-22687970)
chr5 (15-48)||(37303926-37303959)
[»] chr2 (5 HSPs)
chr2 (268-333)||(20503560-20503625)
chr2 (1-48)||(5772853-5772901)
chr2 (14-49)||(1244561-1244596)
chr2 (15-48)||(34034343-34034376)
chr2 (14-47)||(34107268-34107301)
[»] chr1 (16 HSPs)
chr1 (15-52)||(19976622-19976659)
chr1 (1-48)||(7906380-7906428)
chr1 (1-48)||(9768863-9768911)
chr1 (1-48)||(18003809-18003857)
chr1 (15-50)||(40678813-40678848)
chr1 (1-42)||(9004345-9004387)
chr1 (15-49)||(39238707-39238741)
chr1 (12-49)||(8741468-8741505)
chr1 (1-47)||(9527419-9527467)
chr1 (1-49)||(18179320-18179369)
chr1 (15-48)||(25819177-25819210)
chr1 (15-48)||(29491462-29491495)
chr1 (14-43)||(37262173-37262202)
chr1 (15-47)||(2052752-2052784)
chr1 (14-46)||(9410395-9410427)
chr1 (15-47)||(39995619-39995651)
[»] chr6 (9 HSPs)
chr6 (1-48)||(34524868-34524916)
chr6 (1-49)||(2945587-2945637)
chr6 (1-47)||(10455736-10455783)
chr6 (1-47)||(30833011-30833058)
chr6 (15-48)||(9064858-9064891)
chr6 (15-47)||(4078655-4078687)
chr6 (15-47)||(6143958-6143990)
chr6 (15-47)||(14981772-14981804)
chr6 (13-49)||(29169644-29169680)
[»] chr4 (16 HSPs)
chr4 (15-47)||(48968280-48968312)
chr4 (1-48)||(49039499-49039547)
chr4 (1-49)||(48512190-48512240)
chr4 (14-48)||(29785143-29785177)
chr4 (13-47)||(30696721-30696755)
chr4 (14-48)||(41492566-41492600)
chr4 (14-48)||(54854247-54854281)
chr4 (1-47)||(36008268-36008316)
chr4 (1-49)||(38657532-38657581)
chr4 (15-48)||(53815688-53815721)
chr4 (17-49)||(9692953-9692985)
chr4 (15-47)||(28520801-28520833)
chr4 (1-48)||(33359810-33359858)
chr4 (15-47)||(36257688-36257720)
chr4 (19-47)||(40150466-40150494)
chr4 (15-47)||(42411524-42411556)
[»] chr3 (9 HSPs)
chr3 (1-48)||(16874244-16874292)
chr3 (1-49)||(41767822-41767872)
chr3 (15-49)||(9624974-9625008)
chr3 (1-50)||(24130550-24130600)
chr3 (15-49)||(27183751-27183785)
chr3 (15-48)||(10959125-10959158)
chr3 (15-47)||(14868678-14868710)
chr3 (15-47)||(38555097-38555129)
chr3 (15-47)||(47191366-47191398)
[»] scaffold0809 (1 HSPs)
scaffold0809 (15-47)||(4875-4907)
[»] scaffold0712 (1 HSPs)
scaffold0712 (1-48)||(4513-4561)
[»] scaffold0709 (1 HSPs)
scaffold0709 (1-48)||(4533-4581)
[»] scaffold0036 (1 HSPs)
scaffold0036 (15-47)||(25019-25051)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 2 - 173
Target Start/End: Complemental strand, 23239164 - 23238994
Alignment:
Q  2 catataacaataatgtccctgccaactgaactatgctcacggggacaactattttttacctgaattcaaaaaatcagaataacaagatccttcaatgcaa 101  Q
    ||||||||||||||||| |||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23239164 catataacaataatgtctctgcca-ctgagctatgctcacggggacaaatattttttacctgaattcaaaaaatcagaataacaagatccttcaatgcaa 23239066  T
Q  102 taagtgggtagaagactccaacgaggatatcttttataacaatcggcagcacaggtacactcttctataata 173  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  23239065 taattgggtagaagactccaacgaggatatcttttataacaatcggcagcataagtacactcttctataata 23238994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 239 - 375
Target Start/End: Complemental strand, 23238924 - 23238788
Alignment:
Q  239 tcagaattagcttacccttggaaaaggttacaacaagaaatagggaaacaaaaatgatcataatataaaaaatcttgaatatttcagccatttttcacct 338  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23238924 tcagaatgagcttacccttggaaaaggttacaacaagaaatagggaaacaaaaatgatcataatataaaaaatcttgaacatttcagccatttttcacct 23238825  T
Q  339 ttatgcgttacaaatataaactcctttatcactttat 375  Q
    || ||||| |||||||||||||| |||||||| ||||    
T  23238824 ttgtgcgtaacaaatataaactcatttatcacattat 23238788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 249 - 375
Target Start/End: Complemental strand, 23233516 - 23233389
Alignment:
Q  249 cttacccttggaaaaggttacaacaagaaatagggaaacaaaaatgatcataatataaaaaatcttgaatatttcagccat-ttttcacctttatgcgtt 347  Q
    |||||| || ||||||| ||||||||||||||||||||| |||||||||||| ||||||||| |||||| ||||||||||| |||| | |||| || ||     
T  23233516 cttaccattagaaaaggatacaacaagaaatagggaaactaaaatgatcatagtataaaaaaacttgaacatttcagccatttttttatctttgtgtgta 23233417  T
Q  348 acaaatataaactcctttatcactttat 375  Q
    | |||||| ||||||||||| |||||||    
T  23233416 aaaaatatgaactcctttattactttat 23233389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14012653 - 14012603
Alignment:
Q  1 gcatataacaat--aatgtccctgccaactgaactatgctcacggggacaa 49  Q
    ||||||||||||  | |||||||||||||||||||||||||||||||||||    
T  14012653 gcatataacaatgcattgtccctgccaactgaactatgctcacggggacaa 14012603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 29937251 - 29937203
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggaca 48  Q
    ||||||||||||| |||||||| |||||||| |||||||||||||||||    
T  29937251 gcatataacaatacatgtccctaccaactgagctatgctcacggggaca 29937203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 14011092 - 14011139
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggac 47  Q
    ||||||||||||  |||||||||||||||||||||||||||| |||||    
T  14011092 gcatataacaatgcatgtccctgccaactgaactatgctcacagggac 14011139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 39432396 - 39432431
Alignment:
Q  14 atgtccctgccaactgaactatgctcacggggacaa 49  Q
    ||||||||||||||||| ||||||||||||||||||    
T  39432396 atgtccctgccaactgagctatgctcacggggacaa 39432431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 216201 - 216250
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggacaa 49  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||| ||||    
T  216201 gcatataacaatgtatgtccctgccaactgagctatgctcacgggaacaa 216250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 692761 - 692810
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggacaa 49  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||| ||||    
T  692761 gcatataacaatgtatgtccctgccaactgagctatgctcacgggaacaa 692810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 696970 - 697019
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggacaa 49  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||| ||||    
T  696970 gcatataacaatgtatgtccctgccaactgagctatgctcacgggaacaa 697019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 729824 - 729873
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggacaa 49  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||| ||||    
T  729824 gcatataacaatgtatgtccctgccaactgagctatgctcacgggaacaa 729873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 853719 - 853768
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggacaa 49  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||| ||||    
T  853719 gcatataacaatgtatgtccctgccaactgagctatgctcacgggaacaa 853768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 2800044 - 2800012
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||||| ||||||||||||||||    
T  2800044 tgtccctgccaactgagctatgctcacggggac 2800012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 10292377 - 10292345
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||||| ||||||||||||||||    
T  10292377 tgtccctgccaactgagctatgctcacggggac 10292345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 24572906 - 24572954
Alignment:
Q  2 catataacaata-atgtccctgccaactgaactatgctcacggggacaa 49  Q
    |||||||| ||| ||||| ||||||||||| ||||||||||||||||||    
T  24572906 catataacgatacatgtctctgccaactgagctatgctcacggggacaa 24572954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 374
Target Start/End: Original strand, 23123081 - 23123183
Alignment:
Q  270 aacaagaaatagggaaacaaaaatgatcataatataaaaaatcttgaatatttcagccatttttcacctttatgcgttacaaatataaactcctttatca 369  Q
    ||||| |||||||||||||| |||||  ||| ||||||| | |||||| |||||||||||| ||||||||  || || |||| |||||| | ||||||||    
T  23123081 aacaaaaaatagggaaacaagaatgactatagtataaaagaacttgaaaatttcagccattattcacctt--tgtgtaacaagtataaatttctttatca 23123178  T
Q  370 cttta 374  Q
    |||||    
T  23123179 cttta 23123183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 14818435 - 14818470
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggacaac 50  Q
    |||||||||||||||| |||||||||||||||||||    
T  14818435 tgtccctgccaactgagctatgctcacggggacaac 14818470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 15265433 - 15265468
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggacaac 50  Q
    |||||||||||||||| |||||||||||||||||||    
T  15265433 tgtccctgccaactgagctatgctcacggggacaac 15265468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 23098603 - 23098544
Alignment:
Q  276 aaatagggaaacaaaaatgatcataatataaaaaatcttgaatatttcagccatttttca 335  Q
    ||||| ||||||||||| ||||||| |||||| || |||||  |||||||||||||||||    
T  23098603 aaatatggaaacaaaaaggatcatagtataaacaaacttgagaatttcagccatttttca 23098544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 24440983 - 24441018
Alignment:
Q  14 atgtccctgccaactgaactatgctcacggggacaa 49  Q
    |||||||| |||||||||||||||||||||||||||    
T  24440983 atgtccctaccaactgaactatgctcacggggacaa 24441018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32514690 - 32514737
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||| |||| ||||| ||||||||||||||||||||||||||||    
T  32514690 gcatataataatacatgtctctgccaactgaactatgctcacggggac 32514737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4169117 - 4169069
Alignment:
Q  1 gcatataacaataa--tgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||   |||||||||||||||| ||||||||||||||||    
T  4169117 gcatataacaatacattgtccctgccaactgagctatgctcacggggac 4169069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21285407 - 21285455
Alignment:
Q  1 gcatataacaat--aatgtccctgccaactgaactatgctcacggggac 47  Q
    ||||||||||||  | |||||||||||||||| ||||||||||||||||    
T  21285407 gcatataacaatgcattgtccctgccaactgagctatgctcacggggac 21285455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 38363200 - 38363151
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggacaa 49  Q
    ||||||||||||  |||| |||||||| ||||||||||||||||||||||    
T  38363200 gcatataacaatgtatgttcctgccaattgaactatgctcacggggacaa 38363151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45267980 - 45268029
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggacaa 49  Q
    |||||||| |||| ||||| ||||||||||| ||||||||||||||||||    
T  45267980 gcatataataatatatgtctctgccaactgagctatgctcacggggacaa 45268029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8766865 - 8766913
Alignment:
Q  1 gcatataacaat-aatgtccctgccaactgaactatgctcacggggaca 48  Q
    |||||| ||||| ||||||||||||||||||  ||||||||||||||||    
T  8766865 gcatatgacaatgaatgtccctgccaactgagttatgctcacggggaca 8766913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 299
Target Start/End: Original strand, 16199767 - 16199799
Alignment:
Q  267 tacaacaagaaatagggaaacaaaaatgatcat 299  Q
    |||||||||||||||||||||||||| ||||||    
T  16199767 tacaacaagaaatagggaaacaaaaaggatcat 16199799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17305444 - 17305492
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggaca 48  Q
    ||||||||||||  ||||||||||||||||| |||||||||||| ||||    
T  17305444 gcatataacaatgcatgtccctgccaactgagctatgctcacggagaca 17305492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 41139112 - 41139080
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||||| ||||||||||||||||    
T  41139112 tgtccctgccaactgagctatgctcacggggac 41139080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34087 - 34136
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggacaa 49  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  34087 gcatataacaatgcatgtccctgccaactgagctatgctcacggggacaa 34136  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 3536004 - 3536037
Alignment:
Q  14 atgtccctgccaactgaactatgctcacggggac 47  Q
    ||||||||||||||||||||||||||||||||||    
T  3536004 atgtccctgccaactgaactatgctcacggggac 3536037  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 11246548 - 11246599
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggacaact 51  Q
    ||||||||||||  ||||||||||||||||| |||||||||||| |||||||    
T  11246548 gcatataacaatgcatgtccctgccaactgagctatgctcacggtgacaact 11246599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 9196151 - 9196185
Alignment:
Q  13 aatgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||| ||||||||||||||||||||    
T  9196151 aatgtccctgccaattgaactatgctcacggggac 9196185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 22687937 - 22687970
Alignment:
Q  14 atgtccctgccaactgaactatgctcacggggac 47  Q
    ||||||||||||||||| ||||||||||||||||    
T  22687937 atgtccctgccaactgagctatgctcacggggac 22687970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 37303959 - 37303926
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggaca 48  Q
    |||||||||||||||| |||||||||||||||||    
T  37303959 tgtccctgccaactgagctatgctcacggggaca 37303926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 20503625 - 20503560
Alignment:
Q  268 acaacaagaaatagggaaacaaaaatgatcataatataaaaaatcttgaatatttcagccattttt 333  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||  ||||  |||| ||||||||||    
T  20503625 acaacaagaaatagggaaataaaaaggatcataatataaacaaatttgagaattttagccattttt 20503560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 5772901 - 5772853
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggaca 48  Q
    ||||||||||||| |||||| |||||||||| |||||||||||||||||    
T  5772901 gcatataacaatacatgtccttgccaactgagctatgctcacggggaca 5772853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 1244596 - 1244561
Alignment:
Q  14 atgtccctgccaactgaactatgctcacggggacaa 49  Q
    ||||||||||||||||||||||||||||| ||||||    
T  1244596 atgtccctgccaactgaactatgctcacgaggacaa 1244561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 34034376 - 34034343
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggaca 48  Q
    |||||||||||||||| |||||||||||||||||    
T  34034376 tgtccctgccaactgagctatgctcacggggaca 34034343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 34107301 - 34107268
Alignment:
Q  14 atgtccctgccaactgaactatgctcacggggac 47  Q
    ||||||||||||||||| ||||||||||||||||    
T  34107301 atgtccctgccaactgagctatgctcacggggac 34107268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 19976622 - 19976659
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggacaacta 52  Q
    |||||||||||||||| |||||||||||||||||||||    
T  19976622 tgtccctgccaactgagctatgctcacggggacaacta 19976659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 7906380 - 7906428
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggaca 48  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  7906380 gcatataacaatgcatgtccctaccaactgaactatgctcacggggaca 7906428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9768863 - 9768911
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggaca 48  Q
    ||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  9768863 gcatataacaatgcatgtccctgccaactgagctatgctcacggggaca 9768911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18003857 - 18003809
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggaca 48  Q
    ||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  18003857 gcatataacaatgcatgtccctgccaactgagctatgctcacggggaca 18003809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 40678848 - 40678813
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggacaac 50  Q
    |||||||||||||||| |||||||||||||||||||    
T  40678848 tgtccctgccaactgagctatgctcacggggacaac 40678813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9004387 - 9004345
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacg 42  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  9004387 gcatataacaatatatgtccctgccaactgagctatgctcacg 9004345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 39238741 - 39238707
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggacaa 49  Q
    |||||||||||||||| ||||||||||||||||||    
T  39238741 tgtccctgccaactgagctatgctcacggggacaa 39238707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 8741505 - 8741468
Alignment:
Q  12 taatgtccctgccaactgaactatgctcacggggacaa 49  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  8741505 taatgtccctaccaactgaactaagctcacggggacaa 8741468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9527467 - 9527419
Alignment:
Q  1 gcatataacaat--aatgtccctgccaactgaactatgctcacggggac 47  Q
    ||||||||||||  | |||||||||||||||| ||||||||||||||||    
T  9527467 gcatataacaatgcattgtccctgccaactgagctatgctcacggggac 9527419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18179369 - 18179320
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggacaa 49  Q
    ||||||||||||  |||||||||||||||||  |||||||||||||||||    
T  18179369 gcatataacaatgcatgtccctgccaactgagttatgctcacggggacaa 18179320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 25819210 - 25819177
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggaca 48  Q
    |||||||||||||||| |||||||||||||||||    
T  25819210 tgtccctgccaactgagctatgctcacggggaca 25819177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 29491495 - 29491462
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggaca 48  Q
    |||||||||||||||| |||||||||||||||||    
T  29491495 tgtccctgccaactgagctatgctcacggggaca 29491462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 37262173 - 37262202
Alignment:
Q  14 atgtccctgccaactgaactatgctcacgg 43  Q
    ||||||||||||||||||||||||||||||    
T  37262173 atgtccctgccaactgaactatgctcacgg 37262202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 2052752 - 2052784
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||||| ||||||||||||||||    
T  2052752 tgtccctgccaactgagctatgctcacggggac 2052784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 9410395 - 9410427
Alignment:
Q  14 atgtccctgccaactgaactatgctcacgggga 46  Q
    |||||| ||||||||||||||||||||||||||    
T  9410395 atgtccttgccaactgaactatgctcacgggga 9410427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 39995619 - 39995651
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||||| ||||||||||||||||    
T  39995619 tgtccctgccaactgagctatgctcacggggac 39995651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34524916 - 34524868
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggaca 48  Q
    ||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  34524916 gcatataacaatgcatgtccctgccaactgagctatgctcacggggaca 34524868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2945637 - 2945587
Alignment:
Q  1 gcatataacaat--aatgtccctgccaactgaactatgctcacggggacaa 49  Q
    ||||||||||||  | |||||||||||||||| ||||||||||||||||||    
T  2945637 gcatataacaatgcattgtccctgccaactgagctatgctcacggggacaa 2945587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10455783 - 10455736
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggac 47  Q
    ||||||||||||  |||| |||||||||||||||||||||||||||||    
T  10455783 gcatataacaatgcatgttcctgccaactgaactatgctcacggggac 10455736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30833058 - 30833011
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggac 47  Q
    ||||||||||||  ||||||||||||||||||||||||||| ||||||    
T  30833058 gcatataacaatgcatgtccctgccaactgaactatgctcatggggac 30833011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 9064891 - 9064858
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggaca 48  Q
    |||||||||||||||| |||||||||||||||||    
T  9064891 tgtccctgccaactgagctatgctcacggggaca 9064858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 4078687 - 4078655
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggac 47  Q
    ||||| |||||||||||||||||||||||||||    
T  4078687 tgtccatgccaactgaactatgctcacggggac 4078655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 6143990 - 6143958
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||||| ||||||||||||||||    
T  6143990 tgtccctgccaactgagctatgctcacggggac 6143958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 14981772 - 14981804
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||||| ||||||||||||||||    
T  14981772 tgtccctgccaactgagctatgctcacggggac 14981804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 29169680 - 29169644
Alignment:
Q  13 aatgtccctgccaactgaactatgctcacggggacaa 49  Q
    |||||||||||||||||| |||||| |||||||||||    
T  29169680 aatgtccctgccaactgagctatgcccacggggacaa 29169644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 48968280 - 48968312
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||||||||||||||||||||||    
T  48968280 tgtccctgccaactgaactatgctcacggggac 48968312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 49039499 - 49039547
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggaca 48  Q
    ||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  49039499 gcatataacaatgcatgtccctgccaactgagctatgctcacggggaca 49039547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48512240 - 48512190
Alignment:
Q  1 gcatataacaat--aatgtccctgccaactgaactatgctcacggggacaa 49  Q
    ||||||||||||  | |||||||||||||||| ||||||||||||||||||    
T  48512240 gcatataacaatgcattgtccctgccaactgagctatgctcacggggacaa 48512190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 29785177 - 29785143
Alignment:
Q  14 atgtccctgccaactgaactatgctcacggggaca 48  Q
    ||||||||||||||||| |||||||||||||||||    
T  29785177 atgtccctgccaactgagctatgctcacggggaca 29785143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 30696755 - 30696721
Alignment:
Q  13 aatgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||||||| ||||||||||||||||    
T  30696755 aatgtccctgccaactgagctatgctcacggggac 30696721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 41492566 - 41492600
Alignment:
Q  14 atgtccctgccaactgaactatgctcacggggaca 48  Q
    ||||||||||||||||| |||||||||||||||||    
T  41492566 atgtccctgccaactgagctatgctcacggggaca 41492600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 54854247 - 54854281
Alignment:
Q  14 atgtccctgccaactgaactatgctcacggggaca 48  Q
    ||||||||||||||||| |||||||||||||||||    
T  54854247 atgtccctgccaactgagctatgctcacggggaca 54854281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36008316 - 36008268
Alignment:
Q  1 gcatataacaat--aatgtccctgccaactgaactatgctcacggggac 47  Q
    ||||||||||||  | |||||||||||||||| ||||||||||||||||    
T  36008316 gcatataacaatgcattgtccctgccaactgagctatgctcacggggac 36008268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 38657581 - 38657532
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggacaa 49  Q
    ||||||||||||  ||||||||||||||||| | ||||||||||||||||    
T  38657581 gcatataacaatgcatgtccctgccaactgagccatgctcacggggacaa 38657532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 53815721 - 53815688
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggaca 48  Q
    |||||||||||||||| |||||||||||||||||    
T  53815721 tgtccctgccaactgagctatgctcacggggaca 53815688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 9692985 - 9692953
Alignment:
Q  17 tccctgccaactgaactatgctcacggggacaa 49  Q
    |||||||||||||| ||||||||||||||||||    
T  9692985 tccctgccaactgagctatgctcacggggacaa 9692953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 28520801 - 28520833
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||||| ||||||||||||||||    
T  28520801 tgtccctgccaactgagctatgctcacggggac 28520833  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 33359858 - 33359810
Alignment:
Q  1 gcatataacaat-aatgtccctgccaactgaactatgctcacggggaca 48  Q
    |||||||||||| ||||||| || ||||||| |||||||||||||||||    
T  33359858 gcatataacaatgaatgtccatgtcaactgagctatgctcacggggaca 33359810  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 36257720 - 36257688
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||||| ||||||||||||||||    
T  36257720 tgtccctgccaactgagctatgctcacggggac 36257688  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 40150494 - 40150466
Alignment:
Q  19 cctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||||||||||||||||||    
T  40150494 cctgccaactgaactatgctcacggggac 40150466  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 42411524 - 42411556
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||||| ||||||||||||||||    
T  42411524 tgtccctgccaactgagctatgctcacggggac 42411556  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 16874244 - 16874292
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggaca 48  Q
    ||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  16874244 gcatataacaatgcatgtccctgccaactgagctatgctcacggggaca 16874292  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 41767822 - 41767872
Alignment:
Q  1 gcatataacaat--aatgtccctgccaactgaactatgctcacggggacaa 49  Q
    ||||||||||||  | ||| |||||||||||||||||||||||||||||||    
T  41767822 gcatataacaatgcattgttcctgccaactgaactatgctcacggggacaa 41767872  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 9625008 - 9624974
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggacaa 49  Q
    |||||||||||||||| ||||||||||||||||||    
T  9625008 tgtccctgccaactgagctatgctcacggggacaa 9624974  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 24130600 - 24130550
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggacaac 50  Q
    ||||||||||||  |||||||||||||||||  ||||||||||||||||||    
T  24130600 gcatataacaatgtatgtccctgccaactgagttatgctcacggggacaac 24130550  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 27183751 - 27183785
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggacaa 49  Q
    |||||||||||||||| ||||||||||||||||||    
T  27183751 tgtccctgccaactgagctatgctcacggggacaa 27183785  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 10959158 - 10959125
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggaca 48  Q
    |||||||||||||||| |||||||||||||||||    
T  10959158 tgtccctgccaactgagctatgctcacggggaca 10959125  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 14868710 - 14868678
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||||| ||||||||||||||||    
T  14868710 tgtccctgccaactgagctatgctcacggggac 14868678  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 38555097 - 38555129
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggac 47  Q
    |||| ||||||||||||||||||||||||||||    
T  38555097 tgtctctgccaactgaactatgctcacggggac 38555129  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 47191398 - 47191366
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||||| ||||||||||||||||    
T  47191398 tgtccctgccaactgagctatgctcacggggac 47191366  T

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Target: scaffold0809 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 4875 - 4907
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||||| ||||||||||||||||    
T  4875 tgtccctgccaactgagctatgctcacggggac 4907  T

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Target: scaffold0712 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 4561 - 4513
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggaca 48  Q
    ||||||||||||  ||||||||||||||||| |||||||||||| ||||    
T  4561 gcatataacaatgcatgtccctgccaactgagctatgctcacggagaca 4513  T

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Target: scaffold0709 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 4581 - 4533
Alignment:
Q  1 gcatataacaata-atgtccctgccaactgaactatgctcacggggaca 48  Q
    ||||||||||||  ||||||||||||||||| |||||||||||| ||||    
T  4581 gcatataacaatgcatgtccctgccaactgagctatgctcacggagaca 4533  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 25051 - 25019
Alignment:
Q  15 tgtccctgccaactgaactatgctcacggggac 47  Q
    |||||||||||||||| ||||||||||||||||    
T  25051 tgtccctgccaactgagctatgctcacggggac 25019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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