View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13516_low_8 (Length: 372)
Name: NF13516_low_8
Description: NF13516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13516_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 80 - 362
Target Start/End: Complemental strand, 40470416 - 40470134
Alignment:
| Q |
80 |
tgtagtaaaattcttcttcatcattgaatttgaatccatttttaacaaagtgatgtaagtaatggattatttaatgctaatgccgtctattaaagactca |
179 |
Q |
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| T |
40470416 |
tgtagtaaaattctttttcatcattgaatttgaatccatttttaacaaagtgatgtaagtaatggattatttaatgataatgccgtctattaaagactca |
40470317 |
T |
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| Q |
180 |
ctgggacagtaaattaattgagattttgagaaattcacgtaagactccactagatttgggtcataattaattgactggaattatattgataaagaaggaa |
279 |
Q |
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| T |
40470316 |
ctgggacagtaaattaattgagattttgagaagttcacgtaagactccactagatttgggtcataattaattgactggaattatattgataaagaaggaa |
40470217 |
T |
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| Q |
280 |
aagaaactgtgtcatatcttttgttttttatcatccttagtttcattgacctttgaaatttggtcaacttgttcacacctatg |
362 |
Q |
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| T |
40470216 |
aagaaactgtgtcatatcttttgttttttatcatccttagtttcattgacctttgaaatttggtcaacttgttcacacctatg |
40470134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 40470619 - 40470562
Alignment:
| Q |
24 |
aaatcagtgtccaaaatctaatatcctcatacacgggttattcattgtcactagcttgta |
83 |
Q |
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| T |
40470619 |
aaatcagtgtccaaaatctaatatcctcat--acgggttattcattgtcaatagcttgta |
40470562 |
T |
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