View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13517_high_2 (Length: 327)
Name: NF13517_high_2
Description: NF13517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13517_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 2316008 - 2316310
Alignment:
| Q |
16 |
ataatatcaaaattgctgctttttgctcaaattaaattgaatggaaatggaaagttgatgggagttgtagcttttcatgtttctgacccatcaaaaaatg |
115 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2316008 |
ataatatcaaagttgctgctttttgctcaaattaaattgaatggaaatggaaagttgatgggagttgtagcttttcatgtttctgacccatcaaaa-atg |
2316106 |
T |
|
| Q |
116 |
aagttgttgcacaaatatacccgaagattctttttccattgaagcctcaaaagacaaaacatcgtatagaacatagatctggaaaatttcatcaacggcc |
215 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2316107 |
aagttgttgcacaaatatacccgaagattttttttccattgaagcctcaaaagccaaaacatcgtatagaacatagatctggaaaatttcatcaacggcc |
2316206 |
T |
|
| Q |
216 |
aagtcaacgacaaccatcggagctttcaacaatgacgatacgttggcagttagttaatagagacgagatgcggcagattgaaccatgagagaaagatgtg |
315 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2316207 |
aagtcaacgacggccaccggagctttcaacaatgacgatacgttggcagttagttaatagagacgagatgcggcagattgaaccatgagagaaagatgtg |
2316306 |
T |
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| Q |
316 |
tact |
319 |
Q |
| |
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|||| |
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| T |
2316307 |
tact |
2316310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 2287965 - 2288264
Alignment:
| Q |
16 |
ataatatcaaaattgctgctttttgctcaaattaaattgaatggaaatggaaagttgatgggagttgtagcttttcatgtttctgacccatcaaaaaatg |
115 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2287965 |
ataatatcaaagttgctgctttttgctcaaattaaattgaatggaaatggaaagttgatgggagttgtagcttttcatgtttctgacccatcaaaa-atg |
2288063 |
T |
|
| Q |
116 |
aagttgttgcacaaatatacccgaagattctttttccattgaagcctcaaaagacaaaacatcgtatagaacatagatctggaaaatttcatcaacggcc |
215 |
Q |
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||||| |||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2288064 |
aagttcttgcacaaatatacccaaagattttttttccattgaagcctcaaaagccaaaacatcgtatagaacatagatctggaaaatttcatcaacggcc |
2288163 |
T |
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| Q |
216 |
aagtcaacgacaaccatcggagctttcaacaatgacgatacgttggcagttagttaatagagacgagatgcggcagattgaaccatgagagaaagatgtg |
315 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2288164 |
aagtcaacgatggccaccggagctttcaacaatgacgatacgttggcagttagttaatagagacgagatgcggcacattgaaccatgagagaaagatgtg |
2288263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 148 - 313
Target Start/End: Original strand, 18548058 - 18548230
Alignment:
| Q |
148 |
tttccattgaagcctcaaaagacaaaacatcgtatagaacatagatctggaaaatttcatcaacggcc-------aagtcaacgacaaccatcggagctt |
240 |
Q |
| |
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|||||||| || |||||||| |||||||||| |||||||||||||||||||||| ||||| |||||| ||||||||||| ||| | |||||| |
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| T |
18548058 |
tttccattaaaatctcaaaagccaaaacatcgcatagaacatagatctggaaaatctcatcgacggcctccgaccaagtcaacgacggccaccagagctt |
18548157 |
T |
|
| Q |
241 |
tcaacaatgacgatacgttggcagttagttaatagagacgagatgcggcagattgaaccatgagagaaagatg |
313 |
Q |
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|||||| ||||||||| ||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| |
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| T |
18548158 |
tcaacagtgacgatacattggcagttagttaacagagacgagatgtggcagattgaaccttgagagaaagatg |
18548230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 18547969 - 18548034
Alignment:
| Q |
28 |
ttgctgctttttgctcaaattaaattgaatggaaatggaaagttgatgggagttgtagcttttcatg |
94 |
Q |
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|||||| |||| ||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
18547969 |
ttgctgtttttcgctcaaattaaatagaatggaaatgaaaagttgat-ggagttgtagcttttcatg |
18548034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 182 - 311
Target Start/End: Original strand, 37628080 - 37628216
Alignment:
| Q |
182 |
tagaacatagatctggaaaatttcatcaacggcc-------aagtcaacgacaaccatcggagctttcaacaatgacgatacgttggcagttagttaata |
274 |
Q |
| |
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|||||||||||||| |||||| ||||||| |||| ||||||||||| ||| | ||||||||||| |||||| ||| |||||||||||||| | |
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| T |
37628080 |
tagaacatagatcttgaaaatctcatcaaaggccgccgaccaagtcaacgacggccaccagagctttcaacggtgacgaaacgctggcagttagttaaca |
37628179 |
T |
|
| Q |
275 |
gagacgagatgcggcagattgaaccatgagagaaaga |
311 |
Q |
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||||||||||| ||||||| ||| | ||||||||||| |
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| T |
37628180 |
gagacgagatgtggcagatagaatcttgagagaaaga |
37628216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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