View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13517_high_6 (Length: 212)

Name: NF13517_high_6
Description: NF13517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13517_high_6
NF13517_high_6
[»] chr3 (4 HSPs)
chr3 (18-201)||(36230967-36231150)
chr3 (161-195)||(2338360-2338394)
chr3 (161-195)||(21239708-21239742)
chr3 (161-195)||(52894030-52894064)
[»] scaffold0393 (1 HSPs)
scaffold0393 (161-195)||(11078-11112)
[»] chr8 (4 HSPs)
chr8 (161-195)||(1668646-1668680)
chr8 (161-195)||(16659440-16659474)
chr8 (161-195)||(22015454-22015488)
chr8 (161-195)||(38520770-38520804)
[»] chr4 (3 HSPs)
chr4 (161-195)||(23217764-23217798)
chr4 (161-195)||(45144559-45144593)
chr4 (161-195)||(45153339-45153373)
[»] chr2 (1 HSPs)
chr2 (161-195)||(3934837-3934871)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 36231150 - 36230967
Alignment:
Q  18 atgtattatgtataagtttcattcttcatataccctttttaattttcttttgtgtgtatatttgtggtttcattctttgcaaatgcagaggtagatgtgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36231150 atgtattatgtataagtttcattcttcatataccctttttaattttcttttgtgtgtatatttgtggtttcattctttgcaaatgcagaggtagatgtgg 36231051  T
Q  118 atcaaaggaatgaggcaaaaggttacagtgaagaatttcaagcaatgttagatagattggagcaagaagatagctatgatgatg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36231050 atcaaaggaatgaggcaaaaggttacagtgaagaatttcaagcaatgttagatagattggagcaagaagatagctatgaagatg 36230967  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 2338394 - 2338360
Alignment:
Q  161 aatgttagatagattggagcaagaagatagctatg 195  Q
    ||||||||||| |||||||||||||||||||||||    
T  2338394 aatgttagataaattggagcaagaagatagctatg 2338360  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 21239708 - 21239742
Alignment:
Q  161 aatgttagatagattggagcaagaagatagctatg 195  Q
    ||||||||||| |||||||||||||||||||||||    
T  21239708 aatgttagataaattggagcaagaagatagctatg 21239742  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 52894030 - 52894064
Alignment:
Q  161 aatgttagatagattggagcaagaagatagctatg 195  Q
    ||||||||||| |||||||||||||||||||||||    
T  52894030 aatgttagataaattggagcaagaagatagctatg 52894064  T

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Target: scaffold0393 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 11112 - 11078
Alignment:
Q  161 aatgttagatagattggagcaagaagatagctatg 195  Q
    ||||||||||| |||||||||||||||||||||||    
T  11112 aatgttagataaattggagcaagaagatagctatg 11078  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 1668646 - 1668680
Alignment:
Q  161 aatgttagatagattggagcaagaagatagctatg 195  Q
    ||||||||||| |||||||||||||||||||||||    
T  1668646 aatgttagataaattggagcaagaagatagctatg 1668680  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 16659440 - 16659474
Alignment:
Q  161 aatgttagatagattggagcaagaagatagctatg 195  Q
    ||||||||||| |||||||||||||||||||||||    
T  16659440 aatgttagataaattggagcaagaagatagctatg 16659474  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 22015454 - 22015488
Alignment:
Q  161 aatgttagatagattggagcaagaagatagctatg 195  Q
    ||||||||||| |||||||||||||||||||||||    
T  22015454 aatgttagatatattggagcaagaagatagctatg 22015488  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 38520804 - 38520770
Alignment:
Q  161 aatgttagatagattggagcaagaagatagctatg 195  Q
    ||||||||||| |||||||||||||||||||||||    
T  38520804 aatgttagataaattggagcaagaagatagctatg 38520770  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 23217798 - 23217764
Alignment:
Q  161 aatgttagatagattggagcaagaagatagctatg 195  Q
    ||||||||||| |||||||||||||||||||||||    
T  23217798 aatgttagataaattggagcaagaagatagctatg 23217764  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 45144559 - 45144593
Alignment:
Q  161 aatgttagatagattggagcaagaagatagctatg 195  Q
    ||||||||||| |||||||||||||||||||||||    
T  45144559 aatgttagataaattggagcaagaagatagctatg 45144593  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 45153339 - 45153373
Alignment:
Q  161 aatgttagatagattggagcaagaagatagctatg 195  Q
    ||||||||||| |||||||||||||||||||||||    
T  45153339 aatgttagataaattggagcaagaagatagctatg 45153373  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 3934871 - 3934837
Alignment:
Q  161 aatgttagatagattggagcaagaagatagctatg 195  Q
    ||||||||||| |||||||||||||||||||||||    
T  3934871 aatgttagataaattggagcaagaagatagctatg 3934837  T

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