View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13517_low_1 (Length: 813)
Name: NF13517_low_1
Description: NF13517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13517_low_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 665; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 19 - 813
Target Start/End: Original strand, 48569526 - 48570319
Alignment:
| Q |
19 |
gatgaattgatggagtattttcccgagcaggcagacttttttaacaaaattatcattagctgatgacggctgtttagttaaatgtatttcaaatgagttt |
118 |
Q |
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| T |
48569526 |
gatgaattgatggagtattttcccgagcaggcagacttttttaacaaaattatcattggctgatgacggctgtttggttaaatgtatttcaaatgagttt |
48569625 |
T |
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| Q |
119 |
atttaattacatcaagaacatgaatgcaggtttatgagctcaacaatatgnnnnnnnattaaacgcaaattctggaggcttgtatatgatttagtggatg |
218 |
Q |
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| T |
48569626 |
atttaattacatcaagaacatgaatgcaggtttatgagctcaacaaaatgtttttt-attaaacgcaaattctggaggcttgtatatgatttagtggatg |
48569724 |
T |
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| Q |
219 |
ttggaaggctatcttctgcacgtcatcagnnnnnnnctctcccatagttatcttgtaataagttgccatgtgcagtgcggctattatactgatgtaaaat |
318 |
Q |
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| T |
48569725 |
ttggaaggctatcttctgcacgtcatcagtttttttctctcccatagttatctcgtaataagttgccatgtgcagtgcggctattatactgttgtaaaat |
48569824 |
T |
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| Q |
319 |
atatagttttggttttctagaggatcctccatatgaggtaatcctattcaagttgtgtcggatcgcaacatgtagatacctctcttaactataactagta |
418 |
Q |
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| T |
48569825 |
atatagttttggttttctagaggatcctccatatgaggtaatcctattcaagttgtgtcggatcgcaacatgtagatacctctcttaactataactagta |
48569924 |
T |
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| Q |
419 |
ttcaaacttgagtttgtcatgttgcgagagtctaaccctatcgctagctcaatcttagttggcgaaatattttacttgaaataagcattgtaaccttttt |
518 |
Q |
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| T |
48569925 |
ttcaaacttgagtttgtcatgttgcgagagtctaaccctatcgctagctcaatcttagttggcgaaatattttacttgaaataagcatcgtaaccttttt |
48570024 |
T |
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| Q |
519 |
gaattttagtgaagggagacttccgttaaaatatttgggattgccggtgggggcaaatccgggtagagaggccacgtggaagacgttggaaca----aat |
614 |
Q |
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| T |
48570025 |
gaattttagtgaagggagacttccatttaaatatttgggattgctggtgggggcaaatccgggtagagaggccacatggaagacgttggaacaaattaat |
48570124 |
T |
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| Q |
615 |
gtcggagaaattgaactcgtggtcatggggaaaaataagcatattagcctcgaagggacaattgtacttcttaattcggtgctaaattcaattccaattt |
714 |
Q |
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| T |
48570125 |
gtcggagaaattgaactcgtggtcatgggg--aaataagcatattagcctcgaagggacaactgtacttcttaattcggtgctaaattcaattccaattt |
48570222 |
T |
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| Q |
715 |
ttcatctttccgttttcaagatgccggtgacggttttgaagattaaagaagctaaaatttcagatttatcaagaacacagatataaaaacaaaattaat |
813 |
Q |
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| T |
48570223 |
ttcatctttcagttttcaagatgccggtgacggttttgaagattaaagaagctaaaatttcagatttatcaagaacac--atataaaaacaaaattaat |
48570319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 36145900 - 36145966
Alignment:
| Q |
19 |
gatgaattgatggagtattttcccgagcaggcagacttttttaacaaaattatcattagctgatgac |
85 |
Q |
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| T |
36145900 |
gatgaattgatggagtattttcctgagcaagctgagtttttaaacaaaatgatcattagctgatgac |
36145966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 10821488 - 10821422
Alignment:
| Q |
19 |
gatgaattgatggagtattttcccgagcaggcagacttttttaacaaaattatcattagctgatgac |
85 |
Q |
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| T |
10821488 |
gatgaattgattgagtattttccagagcaagctgagtttttaaacaaaatgatcattagctgatgac |
10821422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 513 - 579
Target Start/End: Original strand, 13853082 - 13853148
Alignment:
| Q |
513 |
ctttttgaattttagtgaagggagacttccgttaaaatatttgggattgccggtgggggcaaatccg |
579 |
Q |
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| T |
13853082 |
ctttttgaattgtagtcaagggaggcttccatttaagtatttgggattaccggtgggggctaatccg |
13853148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 674 - 756
Target Start/End: Complemental strand, 4864593 - 4864511
Alignment:
| Q |
674 |
aattgtacttcttaattcggtgctaaattcaattccaatttttcatctttccgttttcaagatgccggtgacggttttgaaga |
756 |
Q |
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| T |
4864593 |
aattgtccttcttaattctattttgaattctattcctatctttcatctttcctttttcaaaatgccggtgaaagttttgaaga |
4864511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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