View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13517_low_2 (Length: 477)
Name: NF13517_low_2
Description: NF13517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13517_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 39172568 - 39173017
Alignment:
| Q |
1 |
gaggtggagtggattgacccgagaggttacgtttatttattctgtcttaacaatcaaatatggtatggtcatggactcatgggaagtcataggcagtcgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39172568 |
gaggtggagtggattgacccgagaggttacgtttatttattctgtcttaacaatcaaatatggtatggtcatggactcatgggctgtcataggcagtcgt |
39172667 |
T |
|
| Q |
101 |
gggccgattccatattaaaatcgatttaattggaaaaatcgatttccatattcgtttttgaatttgtagctgggtttatgtaaattgtagttaatgcttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39172668 |
gggccgattccatattaaaatcgatttaattggaaaaatcgatttccatattcgtttttgaatttgtagctgggtttttgtaaattgtagttaatgcttt |
39172767 |
T |
|
| Q |
201 |
taaaggtgggagagttatatttgataatgtactatttcaaatatgcaattgtccaatagcttaattctgttcttggtataccaaaacaacaacaactgaa |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39172768 |
t-aaggtgggagagttatatttgataatgtactatttcaaatatgcagttgtccaatagcttaattctgttcttggtataccaaaacaacaaaaactga- |
39172865 |
T |
|
| Q |
301 |
gctcagctcattctacaattaattaatttcattttcttctttatctactcttgttcaattcaactttttatatattctttaaaggtcctttttcttgagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||| |||||| |
|
|
| T |
39172866 |
----agctcattctacaattaattaatttcattttcttctttatctactcctgttcaattcaactttttatacagtctttaaaggtcctttttattgagt |
39172961 |
T |
|
| Q |
401 |
tatagacttctaatagccaagcttggtattgaaccagaagcacaaaagaatgggtt |
456 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
39172962 |
tatagacttctaatagccaagctcggtattgaaccagaagcacaaaagaaggggtt |
39173017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 39176453 - 39176874
Alignment:
| Q |
1 |
gaggtggagtggattgacccgagaggttacgtttatttattctgtcttaacaatcaaatatggtatggtcatggactcatgggaagtcataggcagtcgt |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
39176453 |
gaggtggagtggatcgacccgagaggttatgtatatttattctgtcttaacaatcaaatatggtatggtcatggactcatgggccgtcataggctg---- |
39176548 |
T |
|
| Q |
101 |
gggccgattccatattaaaatcgatttaattggaaaaatcgatttccatattcgtttttgaatttgtagctgggtttatgtaaattgtagttaatgcttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39176549 |
------attccatattaaaatcgatttaattggaaaaatcgatttccatattcgtttttgaatttgtagctgggtttttgtaaattgtagttaatgcttt |
39176642 |
T |
|
| Q |
201 |
taaaggtgggagagttatatttgataatgtactatttcaaatatgcaattgtcc-aatagcttaattctgttcttggtataccaaaacaacaacaactga |
299 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
39176643 |
taaaggtggtagagttatatttgacaatgtactatttcaaatatggaattgtccaaatagcataattctgttcttggtataccataacaacaaaaactg- |
39176741 |
T |
|
| Q |
300 |
agctcagctcattctacaattaattaatttcattttcttctttatctactcttgttcaattcaactttttatatattctttaaaggtc------------ |
387 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||| | |||||||||||| |
|
|
| T |
39176742 |
----cagcttattctac----aattaatttcattttcttc-ttatctactcttgttcatttcaactttttattcagtctttaaaggtcttctgcatagaa |
39176832 |
T |
|
| Q |
388 |
ctttttcttgagttatagacttctaatagccaagcttggtat |
429 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
39176833 |
ctttttcttgagtcatagacttctaatagccaagctcggtat |
39176874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 39174368 - 39174305
Alignment:
| Q |
20 |
cgagaggttacgtttatttattctgtcttaacaatcaaatatggtatggtcatggactcatggg |
83 |
Q |
| |
|
||||||||||| ||| |||||| ||| ||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
39174368 |
cgagaggttacatttgtttattttgttttaacaaacaaatacagtatggtgatggactcatggg |
39174305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University