View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13518_high_10 (Length: 405)
Name: NF13518_high_10
Description: NF13518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13518_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 5 - 387
Target Start/End: Complemental strand, 35072970 - 35072588
Alignment:
| Q |
5 |
tgtcgaagaatatgaatcgaaattgtagcatttccaccatttcctccatcaaaaccgtgaagatcactatgatcaccactgctctggctttgcaactcac |
104 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072970 |
tgtcgaagaacatgaatcgaaatcgtagcatttccaccatttcctccatcaaaaccgtgaagatcactatgatcaccactgctctggctttgcaactcac |
35072871 |
T |
|
| Q |
105 |
tcgaagcaccaccatatccatttgaaacactcgcaagatcgagtttgacatttccttccccattttcaggattaccaaccctagcaaatctccgaagccc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072870 |
tcgaagcaccaccatatccatttgaaacactcgcaagatcgagtttgacatttccttccccattttcaggattaccaaccctagcaaatctccgaagccc |
35072771 |
T |
|
| Q |
205 |
ctttctggaataacacttccaagaaaaccatgnnnnnnnaacaacaaaacccacaacaataagcactattattataataatccaaactttcttcatcgaa |
304 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072770 |
ctttctggaataacacttccaagaaaaccatgcccccccaacaacaaaacccacaacaataagcactattattataataatccaaactttcttcatcgaa |
35072671 |
T |
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| Q |
305 |
gcaccttttcccgatccagcaggacttccaccaggagcagaaccaggcgctccacctccatgatttttaccaagccaaacatt |
387 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072670 |
gcaccttttcccgatccagcaggacttccaccaggagcagaaccaggcgctccacctccatgatttttaccaagccaaacatt |
35072588 |
T |
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