View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13518_high_14 (Length: 241)
Name: NF13518_high_14
Description: NF13518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13518_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 16868154 - 16868376
Alignment:
| Q |
1 |
tgttgaaagcttcaatgtaattcacattttcagtgaatatcttgaaacgtttttccctttcttgagaatccttataaactttaccatactgaaccatcca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
16868154 |
tgttgaaagcttcaatgtaattcacattttcagtgaatatcttgaaacgtttctccctttcttgagaatccttataaactttaccatattgactcatcca |
16868253 |
T |
|
| Q |
101 |
ttgctcgtgcctctcatacatggagtcatcttggagagtgcgagaagtgacttgaatagcaaacaatcctaaacataaaagcaatgccaatgaaatatga |
200 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16868254 |
ttgccggtgcctctcatacat---gtcatcttggagagtgcgagaagtgacttgaatagcaaacaatcctaaacatagaagcaatgccaatgaaatatga |
16868350 |
T |
|
| Q |
201 |
tataagtgattattgacagccatggt |
226 |
Q |
| |
|
||||||||||||||| |||||||||| |
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|
| T |
16868351 |
tataagtgattattggcagccatggt |
16868376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 30892100 - 30891869
Alignment:
| Q |
1 |
tgttgaaagcttcaatgtaattcacattttcagtgaatatcttgaaacgtttttccctttcttgagaatccttataaactttaccatactgaaccatcca |
100 |
Q |
| |
|
||||| |||||||||||||||| || ||||| |||||||||| ||||| || || ||||||||| ||||||||| ||||| ||||| ||||||||||| |
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| T |
30892100 |
tgttggaagcttcaatgtaatttacgttttctttgaatatctttaaacgattctctctttcttgaagatccttatagactttgccatagtgaaccatcca |
30892001 |
T |
|
| Q |
101 |
ttgctcgtgcctctcatacatg---gagtcatcttggagagtgcgagaagtgacttgaatagcaaacaatcctaaacataaaagcaatgccaatgaaa-- |
195 |
Q |
| |
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||| || ||| ||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
30892000 |
ttgttcatgcttctcatatatgatggagtcatcttggagagtacgagaagtgacttgaatagcaaacaatcccaaacataaaagcaatgacaatgaaatg |
30891901 |
T |
|
| Q |
196 |
-tatgatataagtgattattgacagccatggt |
226 |
Q |
| |
|
|||||||||| ||||||||| ||| |||||| |
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|
| T |
30891900 |
ctatgatataattgattattggcagtcatggt |
30891869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 30720342 - 30720562
Alignment:
| Q |
1 |
tgttgaaagcttcaatgtaattcacattttcagtgaatatcttgaaacgtttttccctttcttgagaatccttataaactttaccatactgaaccatcca |
100 |
Q |
| |
|
||||| |||||||||||||||| || ||||| |||||||||| ||||| || || ||||||||| ||||||||| ||||| ||||| ||||||||||| |
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|
| T |
30720342 |
tgttggaagcttcaatgtaatttacgttttctttgaatatctttaaacgattctctctttcttgaagatccttatagactttgccatagtgaaccatcca |
30720441 |
T |
|
| Q |
101 |
ttgctcgtgcctctcatacatg---gagtcatcttggagagtgcgagaagtgacttgaatagcaaacaatcctaaacataaaagcaatgccaatgaaa-- |
195 |
Q |
| |
|
||| || ||| ||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
30720442 |
ttgttcatgcttctcatatatgttggagtcatcttggagagtacgagaagtgacttgaatagcaaacaatcccaaacataaaagcaatgacaatgaaatg |
30720541 |
T |
|
| Q |
196 |
-tatgatataagtgattattg |
215 |
Q |
| |
|
|||||||||| ||||||||| |
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|
| T |
30720542 |
ctatgatataattgattattg |
30720562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30881017 - 30880788
Alignment:
| Q |
1 |
tgttgaaagcttcaatgtaattcacattttcagtgaatatcttgaaacgtttttccctttcttgagaatccttataaactttaccatactgaaccatcca |
100 |
Q |
| |
|
||||| |||||||||||||||| || ||||| |||||||||| ||||| || || ||||||||| ||||||||| ||||| ||||| ||||||||||| |
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|
| T |
30881017 |
tgttggaagcttcaatgtaatttacgttttctttgaatatctttaaacgattctctctttcttgaagatccttatagactttgccatagtgaaccatcca |
30880918 |
T |
|
| Q |
101 |
ttgctcgtgcctctcatacatg---gagtcatcttggagagtgcgagaagtgacttgaatagcaaacaatcctaaacataaaagcaatgccaatgaaa-- |
195 |
Q |
| |
|
||| || ||| ||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| || || |||| |||||||||||||| |
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|
| T |
30880917 |
ttgttcatgcttctcatatatgatggagtcatcttggagagtacgagaagtgacttgaatagcaaacaatcccaagcagaaaaacaatgccaatgaaatg |
30880818 |
T |
|
| Q |
196 |
-tatgatataagtgattattgacagccatg |
224 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |
|
|
| T |
30880817 |
ctatgatataattgattattggcagccatg |
30880788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 44731780 - 44731948
Alignment:
| Q |
1 |
tgttgaaagcttcaatgtaattcacattttcagtgaatatcttgaaacgtttttccctttcttgagaatccttataaactttaccatactgaaccatcca |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||| | |||||||||||| ||||| ||||||||||| | ||||||||| ||||| | ||| ||| |||||| |
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| T |
44731780 |
tgttgaaaacttcaatgtaattcacatttgctgtgaatatcttgtgacgttcctccctttcttgtggatccttatagactttgctatattgactcatcca |
44731879 |
T |
|
| Q |
101 |
ttgctcgtgcctctcatacatggagtcatcttggagagtgcgagaagtgacttgaatagcaaacaatcc |
169 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| ||||||| |
|
|
| T |
44731880 |
ttgctcgtgcctctcatacatggagtcaacttggagagagcgagaagttacttgaatagcacacaatcc |
44731948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 8898633 - 8898410
Alignment:
| Q |
3 |
ttgaaagcttcaatgtaattcacattttcagtgaatatcttgaaacgtttttccctttcttgagaatccttataaactttaccatactgaaccatccatt |
102 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||||||||||||||| || |||||||||||| ||||||||| ||||| ||||| ||| |||||| |
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|
| T |
8898633 |
ttgaaagcttcaatgtatttcatgttttctgtgaatatcttgaaacgcttctccctttcttgatgatccttatagactttgccatagtgattcatccacc |
8898534 |
T |
|
| Q |
103 |
gctcgtgcctctcatacatggagtcatcttggagagtgcgagaagtgacttgaatagcaaacaatcctaaacataaaagcaatgccaatgaaatatgata |
202 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||||||||| ||||| |||||||||||||| ||||||| || || |||| ||||||||||||||||||||| |
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|
| T |
8898533 |
gctcatgcctctcatgcatggagccatcttggagagtacgagaggtgacttgaatagcccacaatcccaagcagaaaaccaatgccaatgaaatatgata |
8898434 |
T |
|
| Q |
203 |
taagtgattattgacagccatggt |
226 |
Q |
| |
|
||| |||||||| |||||||||| |
|
|
| T |
8898433 |
taattgattattagcagccatggt |
8898410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 31726561 - 31726417
Alignment:
| Q |
1 |
tgttgaaagcttcaatgtaattcacattttcagtgaatatcttgaaacgtttttccctttcttgagaatccttataaactttaccatactgaaccatcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||| | |||| || | | ||||||| ||||| |||| || |||||||| |
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|
| T |
31726561 |
tgttgaaagcttcaatgtaattcacattttctttgaatattccaaaacgtttttgcttttcatgtgcagccttatagactttgccatgttgtaccatcca |
31726462 |
T |
|
| Q |
101 |
ttgctcgtgcctctcatacatggagtcatcttggagagtgcgaga |
145 |
Q |
| |
|
|||||| ||| | |||||||| | ||||| ||||||||| ||||| |
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|
| T |
31726461 |
ttgctcatgcatttcatacatagggtcattttggagagttcgaga |
31726417 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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