View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13518_high_16 (Length: 233)
Name: NF13518_high_16
Description: NF13518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13518_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 47694703 - 47694498
Alignment:
| Q |
16 |
cagcagagaaaagtaaagaggtaagaatctaataattccatattataacnnnnnnntaa-----tctgaattcacactcatgacaagaaaaacctgctct |
110 |
Q |
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| T |
47694703 |
cagcagagaaaagtaaagaggtaagaatctaataattccatattataacagaagaaaaaaaaaatctgaattcacactcatgacaagaaaaacctgctct |
47694604 |
T |
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| Q |
111 |
ttttggcttattccaacgatatccatagctctcctggtggcaagatactcacgagcatcgcttatatcagccaattcatagcatttcgactggttaaggt |
210 |
Q |
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| T |
47694603 |
ttttggcttattccaacgatatccatagctctcctggtggcaagatactcacgagcatcgcttatatcagccaattcatagcatttcgactggttaaggt |
47694504 |
T |
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| Q |
211 |
agtgat |
216 |
Q |
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|||||| |
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| T |
47694503 |
agtgat |
47694498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 215
Target Start/End: Original strand, 35831258 - 35831371
Alignment:
| Q |
102 |
acctgctctttttggcttattccaacgatatccatagctctcctggtggcaagatactcacgagcatcgcttatatcagccaattcatagcatttcgact |
201 |
Q |
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||||| ||||| || | ||||||||| ||| |||||||||| | |||||| ||||||||| ||||||| ||| |||||||| ||||||||||| |||| |
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| T |
35831258 |
acctgatctttgtgacctattccaacaatacccatagctctacgggtggcgagatactcatgagcatcatttacatcagccagttcatagcattgtgact |
35831357 |
T |
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| Q |
202 |
ggttaaggtagtga |
215 |
Q |
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| T |
35831358 |
ggttaaggtagtga |
35831371 |
T |
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