View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13518_high_17 (Length: 217)
Name: NF13518_high_17
Description: NF13518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13518_high_17 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 5920689 - 5920490
Alignment:
| Q |
18 |
ctaaacctacttactggcttctagattcaggagcaaattaacatatatgttccaactagtcatattttacttctttcgatagaatcaaatctgttcgtgt |
117 |
Q |
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| T |
5920689 |
ctaaacataattactggcttctagattcaggagcaaattaacatatatgttccaacttgtcatattttacttcttcccatagaatcaaacctgttcgtgt |
5920590 |
T |
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| Q |
118 |
taatcttccaaataatacttctatcattgttcattttgctggtaatgttgttttcaatcctcagttttatcttaccaatgtgttatattaacctttgtgt |
217 |
Q |
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| T |
5920589 |
taatcttccaaataatacttctatcattgttcattttgctggtaatgttgttttcaatcctcagttttatcttaccaatgtgttatattcaccattgtgt |
5920490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 28 - 217
Target Start/End: Complemental strand, 20324988 - 20324799
Alignment:
| Q |
28 |
ttactggcttctagattcaggagcaaattaacatatatgttccaactagtcatattttacttctttcgatagaatcaaatctgttcgtgttaatcttcca |
127 |
Q |
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| T |
20324988 |
ttactggcttctagattcaggagcaaatgaacatatatgctccaacctttccttttttacttctttgcatagaatcaaacctgttcgagttaatcttcct |
20324889 |
T |
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| Q |
128 |
aataatacttctatcattgttcattttgctggtaatgttgttttcaatcctcagttttatcttaccaatgtgttatattaacctttgtgt |
217 |
Q |
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| T |
20324888 |
aataaaacttctattattgttcattttgctggtaatgttgttttcactcctcaattttatcttaccaatgtattatattcacctttgtgt |
20324799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 29369911 - 29369856
Alignment:
| Q |
110 |
gttcgtgttaatcttccaaataatacttctatcattgttcattttgctggtaatgt |
165 |
Q |
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| T |
29369911 |
gttcgtgttactttaccaaatggtacttctatcattgttcattatgctggtaatgt |
29369856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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