View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13518_high_3 (Length: 566)
Name: NF13518_high_3
Description: NF13518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13518_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 529; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 8 - 556
Target Start/End: Complemental strand, 24225115 - 24224567
Alignment:
| Q |
8 |
caccaccaacaccaactcccatcaaaatcaccatcatcgacaacaacctccctcacgatacccacgacacctactccatcaccttcgactccaccttcac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24225115 |
caccaccaacaccaactcccatcaaaatcaccatcatcgacaacaacctccctcacgatacccacgacacctactccatcaccttcgactccaccttcac |
24225016 |
T |
|
| Q |
108 |
aatccaatccctcttaacctccacaccctccgtcgtcgacacctggctcctcgaaaccctccacctccaccccccattccccgtcctcgtcggcctcgac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24225015 |
aatccaatccctcttaacctccacaccctccgtcgtcgacacctggctcctcgaaaccctccgcctccaccccccattccccgtcctcgtcggcctcgac |
24224916 |
T |
|
| Q |
208 |
gtcgaatggcgccccaatttcaaacgcggccaatccaacccaaccgccgtcctccagctctgtatcaacaaccgctgcctcgttttccaaatcatgcact |
307 |
Q |
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| T |
24224915 |
gtcgaatggcgccccaatttcaaacgcggccaatccaacccaaccgccgtcctccagctctgtatcaacaaccgctgcctcgttttccaaatcatgcact |
24224816 |
T |
|
| Q |
308 |
ccccgttcatccccgtttccctcttaaacttccttgctgactctaataacaaattcgttggtgttggaatcaaagaagatgttgacaagcttatgaaaga |
407 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24224815 |
cccccttcatccctgtttccctcttaaacttccttgctgactctaataacaaattcgttggtgttggaatcaaagaagatgttgacaagcttatgaaaga |
24224716 |
T |
|
| Q |
408 |
ttataatattaccgtttcgaattacgttgatttgagaaaccttgctgctgaggtcatggatgatcaggaaatgttgaagactgggattaagagtttgacg |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24224715 |
ttataatattaccgtttcgaattacgttgatttgagaaaccttgctgctgaggtcatggatgatcatgaaatgttgaagactgggattaagagtttgacg |
24224616 |
T |
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| Q |
508 |
caaaaggtgattgggaaaactcttgtgaaaccgaagaaggttttgatga |
556 |
Q |
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| T |
24224615 |
caaaaggtgattgggaaaactcttgtgaaaccgaagaaggtttcgatga |
24224567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 24229020 - 24229124
Alignment:
| Q |
16 |
acaccaactcccatcaaaatcaccatcatcgacaacaacctccctcacgatacccacgacacctactccatcaccttcgactccaccttcacaatccaat |
115 |
Q |
| |
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|||||| | ||| |||| |||||| || |||||||| ||||||| |||| |||||| ||||||||||||||||| ||||| ||||| ||||||||||| |
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| T |
24229020 |
acaccatcacccttcaacatcaccctcttcgacaaccacctcccctacgacacccacaacacctactccatcaccatcgacaccaccctcacaatccaaa |
24229119 |
T |
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| Q |
116 |
ccctc |
120 |
Q |
| |
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||||| |
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| T |
24229120 |
ccctc |
24229124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 24216052 - 24216000
Alignment:
| Q |
259 |
ctccagctctgtatcaacaaccgctgcctcgttttccaaatcatgcactcccc |
311 |
Q |
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||||| ||||| ||||||||| ||||||||||||||| ||||| |||||||| |
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| T |
24216052 |
ctccaactctgcatcaacaacttctgcctcgttttccagatcatccactcccc |
24216000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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