View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13518_high_6 (Length: 460)
Name: NF13518_high_6
Description: NF13518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13518_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 49568382 - 49568612
Alignment:
| Q |
9 |
acatcatcaatagacaaaaatttaattatcatgtagtgatgatggaataaaagtgtacatatatgattgatcgatcaccaagtaagtattttctcaagcg |
108 |
Q |
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| T |
49568382 |
acatcattaatagacaaaaatttaattatcatgtagtgatgatggaataaaagtgtacatatatgattgatcgatcaccaagtaagtattttctcaagcg |
49568481 |
T |
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| Q |
109 |
tgtagaaagaaaactttacatgattacatctatcaaaag--nnnnnnnnnctttacaataatataggatcacacttgattttaaga-gtgtgttatttga |
205 |
Q |
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| T |
49568482 |
tgtagaaag-aaactttacatgattacatctatcaaaagaacaaaaaaaactttacaat-atataggatcacacttgattttaataggtgtgttatttga |
49568579 |
T |
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| Q |
206 |
ataattatttgcatgacaacttacgagtcaact |
238 |
Q |
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| T |
49568580 |
ataattatttgcatgacaacttacgaatcaact |
49568612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 353 - 445
Target Start/End: Original strand, 49568727 - 49568819
Alignment:
| Q |
353 |
ttatacaaatattattcctttaatttttatctcccctcgcggtcattcgttttctttcacatacatttctttacttcatctcctattctttct |
445 |
Q |
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| T |
49568727 |
ttatacaaatattattcctctaatttttatctccccttgcagtcattcgttttctttcacatacatttctttacttcatctcctattctttct |
49568819 |
T |
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