View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13518_high_7 (Length: 428)
Name: NF13518_high_7
Description: NF13518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13518_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 13 - 348
Target Start/End: Complemental strand, 29470099 - 29469764
Alignment:
| Q |
13 |
aatatcgtggccaaaggactaacaaagaattgtgcatgagactaaaatcaagaaccatgatttgccacataaaaggaatcagaattcaaggcacgatgct |
112 |
Q |
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| T |
29470099 |
aatatcgtggccaaaggactaacaatgaattgtgcattagactaaaatcaagaaccatgatttgccacataaaaggaatcaaaattcaaagcacaatgct |
29470000 |
T |
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| Q |
113 |
tgaaggggcaatttgtgacatgttcagctgacatcacaatttggatatccttcacggtaaaggacgcattcccttccaagttccaagcctactgccaatt |
212 |
Q |
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| T |
29469999 |
tgaaggggcactctgttacatgttcagctgacatcacaatttggatatccttcacggtgaaggacgcattcccttccaagtttcaagcttacttccaatt |
29469900 |
T |
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| Q |
213 |
cattggatcattggattatggctttggtacaaccttctttctcttataggcccgtacacaccacatacacacttgataaaataacacatttcttttaaag |
312 |
Q |
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| T |
29469899 |
cattggatcattggattatggctttggtacaaccttctttctcttataggcccgtacacaccacatacacacttgatgaaataacacatttcttttaaag |
29469800 |
T |
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| Q |
313 |
aagacggacacatattgtatggacaatcagaatcct |
348 |
Q |
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| T |
29469799 |
gagacggacacatattgtatggacaatcagaatcct |
29469764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 29462318 - 29462152
Alignment:
| Q |
13 |
aatatcgtggccaaaggactaacaaagaattgtgcatgagactaaaatcaagaaccatgatttgccacataaaaggaatcagaattcaaggcacgatgct |
112 |
Q |
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| T |
29462318 |
aatatcgtgaccaaaggactaacaaagaattgtgcattagaataaaatcaagaaccatgatctgcctcataaagggaatcaaaattcaaggcacgttgct |
29462219 |
T |
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| Q |
113 |
tgaaggggcaatttgtgacatgttcagctgacatcacaatttggatatccttcacggtaaaggacgc |
179 |
Q |
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| T |
29462218 |
tgatggggcaccttgtgacatgtttagttgacatcacaatttggatatccttcgcggtgaaggacgc |
29462152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 346
Target Start/End: Complemental strand, 29481656 - 29481601
Alignment:
| Q |
291 |
aaataacacatttcttttaaagaagacggacacatattgtatggacaatcagaatc |
346 |
Q |
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| T |
29481656 |
aaataacacatttcttttaaaggagacggacacatctcgtctggacaatcagaatc |
29481601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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