View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13518_low_1 (Length: 598)
Name: NF13518_low_1
Description: NF13518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13518_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 40928403 - 40928802
Alignment:
| Q |
1 |
atatctgcatgcaactatagtattgtactaataaaaagtaaaataataagcgtaaatcagagaatgaattagaatatgaaactaaaggaaacaatgaaag |
100 |
Q |
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| T |
40928403 |
atatctgcatgcaactatagtattgtactaataaaaagtaaaataataagcgtaaatcagagaatgaattagaatatgaaactaaaggaagcaatgaaag |
40928502 |
T |
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| Q |
101 |
atgcacgcacctccatttatccttggttttgcagccagaagcgagataatcaatgagatcctgttttgtaagaggttcagtagcaacaacagcatcttca |
200 |
Q |
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| T |
40928503 |
atgcacgcacctccatttatccttggttttgcagccagaagcgagataatcaatgagatcctgttttgtaagaggttcagtagcaacaacagcatcttca |
40928602 |
T |
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| Q |
201 |
gttggaggactagcagcaacaatgaatctacgactaccaccggaagtaagaattctcttgaacgacaaagaattctttgaagagaaagagaaggtgttgg |
300 |
Q |
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| T |
40928603 |
gttggaggactagcagcaacgatgaatctacgactaccaccggaagtaagaattctcttgaacgacaaagaattctttgaagagaaagagaaggtgttgg |
40928702 |
T |
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| Q |
301 |
aaatggaggttttccgaaaatggaagttatgcggtgttgcgtcgtggcggagagagggagaggatgaggaagcgagtctaaatattgtagtcatgatagt |
400 |
Q |
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| T |
40928703 |
aaatggaggttttccgaatatggaagttatgcggtgttgcgtcgtggcggagagagggagaggatgaggaagcgagtctaaatattgtagtcatgatagt |
40928802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 488 - 588
Target Start/End: Original strand, 40928897 - 40928997
Alignment:
| Q |
488 |
ggggaaatggtatttgcttcctttgattcactccttcacactctctgaaaagactcagacacagtcaccgcttgtcccgttactcagttctttgatgatg |
587 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40928897 |
ggggaaatggtatttgcttcctttgattcactccttcacactctctgaaaagactcagacacagtcaccgcttgtcccgttactcagttctttgataatg |
40928996 |
T |
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| Q |
588 |
t |
588 |
Q |
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| |
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| T |
40928997 |
t |
40928997 |
T |
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