View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13518_low_11 (Length: 307)
Name: NF13518_low_11
Description: NF13518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13518_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 4194507 - 4194787
Alignment:
| Q |
1 |
aatagatggaaattataggcgacttatcacagcttccagctcagaaggggtgtaaa--tgatacgctggagcaaccttcgcaatgccaacgttgttggga |
98 |
Q |
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| T |
4194507 |
aatagatggaaattataggcgacttatcacagcttccagctcagaaaaggtgtaaagatgatatgctggagcaaccttcgctatgtcaacgttgttggga |
4194606 |
T |
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| Q |
99 |
gtgacctaatgtgaaagtacggaggaaacaagttagaatttattctcagcaagggggcaaacaacttgaagtccatgcatatgaatttaacttttacctt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4194607 |
gtgacctaatgtgaaagtacggaggaaacaagttagaatttattctcagcaagggggcaaacaacttgaagtccatgcatatgaatttaacttttacctt |
4194706 |
T |
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| Q |
199 |
ctctcccataacttgcttcagaattgataaagcaatagtctcagctttttcaagagttaagtcctgcacaacataataaat |
279 |
Q |
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| T |
4194707 |
ctctcccattacttgcttcagaattgataaagcaatagtctcagctttttcaagagttaagtcctgcacaacataataaat |
4194787 |
T |
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Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 50772724 - 50772454
Alignment:
| Q |
1 |
aatagatggaaattataggcgacttatcacagcttccagctcagaaggggtgtaaa--tgatacgctggagcaaccttcgcaatgccaacgttgttggga |
98 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||| ||||| |||| |||||||||||||||||| | |||||| |||||||||||||| |
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| T |
50772724 |
aatagatggaaatcataggcgacttatcacagcttccacctcagacggggtataaagatgatacgctggagcaaccctggcaatgtcaacgttgttggga |
50772625 |
T |
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| Q |
99 |
gtgacctaatgtgaaagtacggaggaaacaagttagaatttattctcagca-agggggcaaacaacttgaagt-ccatgcatatgaatttaacttttacc |
196 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||||| | |||||||||||||| ||||| |||||| || |||||| |||||| |
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| T |
50772624 |
gtgacctaatgtgaaagtacagaagaaacaagttagaatttattctcagtagggggggcaaacaactggaagtaagatgcatttggttttaac-tttacc |
50772526 |
T |
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| Q |
197 |
ttctctcccataacttgcttcagaattgataaagcaatagtctcagctttttcaagagttaagtcctgcaca |
268 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
50772525 |
ttctcttccataacttgcttcaggattgataaagcaatagtctcagcttcttgaagagttaagtcctgcaca |
50772454 |
T |
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