View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13518_low_12 (Length: 306)
Name: NF13518_low_12
Description: NF13518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13518_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 32 - 231
Target Start/End: Complemental strand, 36709525 - 36709327
Alignment:
| Q |
32 |
gctcaggctcaggtgtttgctattgatttgaatttacctccaccaatggatgatgaagaagtgatccgcgtcactaccctgtgtctctgactccccgccg |
131 |
Q |
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| T |
36709525 |
gctcaggctcaggtgtttgctattgatttgaatttacctccaccaatggatgatgaagaagtgatccgcgtcactaccctgtgtctctgactccccgccg |
36709426 |
T |
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| Q |
132 |
ctgtctgtggacccaatctgctgaagagatgttttttatgttttaattttatgaatgtagtttattgaggctgggnnnnnnntaagagaactttacattg |
231 |
Q |
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| T |
36709425 |
ctgcctgtgga-ccaatctgctgaagagatgttttttatgttttaattttatgaatgtagtttattgaggctgggaaaaaaataagagaactttacattg |
36709327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 36722350 - 36722287
Alignment:
| Q |
25 |
ggctcaggctcaggctcaggtgtttgctattgatttgaatttacctccaccaatggatgatgaa |
88 |
Q |
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|||||| | ||| |||| |||||||||||||||| ||||||| ||||| || |||||||||||| |
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| T |
36722350 |
ggctcaagttcaagctctggtgtttgctattgatctgaatttgcctcctccgatggatgatgaa |
36722287 |
T |
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