View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13518_low_13 (Length: 300)
Name: NF13518_low_13
Description: NF13518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13518_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 55298001 - 55297722
Alignment:
| Q |
19 |
aaatttgggaacagaaacaagatctgaaaagaaaaaccctaaaccctaacctaacacagcgaaaacgaaaa------ttgaagatctaaagcaagataaa |
112 |
Q |
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| T |
55298001 |
aaatttgggaacagaaacaagatctgaaaagaaaaaccctaaaccctaacctaacagagcgaaaacgaaaacgaaaattgaagatctaaagcaagataaa |
55297902 |
T |
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| Q |
113 |
tgaagaaatgaattaggttagaaaagtagtagagtaaagagaaacgataccatctttgagagcggccaaacactcataggaaatctcgaactgaaaggga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55297901 |
tgaagaaatgaattaggttagaaaagtagtagagtaaagagaaacgataccatctttgagagcggccaaacactcataggaaatctcgaactgaaaggga |
55297802 |
T |
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| Q |
213 |
ttgagaaacgaagctggattgtcgaggaccgtcacgttcgtgatattcaccgcgctcatcctcctcctccttcttcttct |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55297801 |
ttgagaaacgaagctggattgtcgaggaccgtcacgttcgtgatattcaccgcgctcatcctcctcctccttcttcttct |
55297722 |
T |
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