View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13518_low_15 (Length: 256)
Name: NF13518_low_15
Description: NF13518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13518_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 43561878 - 43561652
Alignment:
| Q |
13 |
aaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctgctttgagtataaagggtcattcagcaattctg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43561878 |
aaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctgctttgagtataaagggtcattcagcaattctt |
43561779 |
T |
|
| Q |
113 |
aacttccccgaaatagcgcacatgcttccaagaccaacaacgttgtctccacgtgacattcaagttgcagctgcagaagctgctgccatggtggaatttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43561778 |
aacttccccgaaatagcgcacatgcttccaagaccaacaacgttgtctccacgtgacattcaagttgcagctgcagaagctgctgccatggtggaatttg |
43561679 |
T |
|
| Q |
213 |
attctcaaatattgcgctcaacaatct |
239 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
43561678 |
attctcaaatattgcgctcaacaatct |
43561652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 36077810 - 36077744
Alignment:
| Q |
14 |
aaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctg |
80 |
Q |
| |
|
|||||| |||| ||||| ||||||||| |||| || ||||||||||||| ||| |||||||| |||| |
|
|
| T |
36077810 |
aaatcaagaatatggctaggaacttaccctacaccagaaatggcagctatagcacatgatgtagctg |
36077744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 505613 - 505520
Alignment:
| Q |
13 |
aaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctgctttgagtataaagggtcattcagca |
106 |
Q |
| |
|
||||||| |||| ||||||||||| ||| |||| ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
505613 |
aaaatcaagaatatggcttggaacataccctacagctgaaatggcagctagagcacatgatgtagctgctttagctataaagggtcattcagca |
505520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 16357880 - 16357796
Alignment:
| Q |
21 |
gaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctgctttgagtataaagggtcattcagc |
105 |
Q |
| |
|
|||| ||||||||||| ||| |||| ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
16357880 |
gaatatggcttggaacataccctacagctgaaatggcagctagagctcatgatgtagctgctttagccataaagggtcattcagc |
16357796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University