View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13518_low_17 (Length: 239)
Name: NF13518_low_17
Description: NF13518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13518_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 6285635 - 6285819
Alignment:
| Q |
10 |
aatatataaagacatttgtcaacggtattttagttttgggcatttctaacccttaaaagacatcacgatgcaacttatctnnnnnnntatatcaaataat |
109 |
Q |
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| T |
6285635 |
aatatataaagacatttgtcaacggtattttagttttgggcatttctaacccttaaaagacatcacgatgcaacttatctaaaaaaatatatcaaataat |
6285734 |
T |
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| Q |
110 |
tttataaaaagagttgctacnnnnnnntaattcctactttaaagaaacaatgatgtgaaagttttactaataaaatgaaaagaatg |
195 |
Q |
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| T |
6285735 |
tttataaaaagagttgctac-aaaaaataattcctactttaaagaaacaatgatgtgaaagttttactaatagaatgaaaagaatg |
6285819 |
T |
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