View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13518_low_2 (Length: 594)
Name: NF13518_low_2
Description: NF13518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13518_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 10 - 546
Target Start/End: Original strand, 10305879 - 10306414
Alignment:
| Q |
10 |
acatcatcaattattattctagcatacaaatttgcacatggagaaactaatacgttcgtggcaaaacaacactcaaatcacaaagtggcaccagtctatt |
109 |
Q |
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| T |
10305879 |
acatcaccaattattattctagcatacaaatttgcacatggagaaactaatacattcgtggcaaa-caacactcaaatcacaaagtggcaccagtctatt |
10305977 |
T |
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| Q |
110 |
agaacttctgtttcatcaatcctcagcaatagctgctgccatctaaaaatcatcaccaaaaccaaattattataaaacaatgcaaggtttggtcctttta |
209 |
Q |
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| T |
10305978 |
agaacttctgtttcatcaatcctcaccaatagctgctgccatctaaaaatcatcaccaaaaccaaattattataaaacaatgcgaggtttggtcctttta |
10306077 |
T |
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| Q |
210 |
agaggctagagatgttactccaatggaataaatttccaaccactatacacctgagaggtttcatgaaacatagaagacgaaggacaataaccgattactg |
309 |
Q |
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| T |
10306078 |
agaggctagagatgttactccaatggaataaatttccaaccactatacacctgagagatttcatgaaacatagaagacgaaggacaataaccgattactg |
10306177 |
T |
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| Q |
310 |
tgaaatactaacattaccactactgcatttacatttttgtactatatgaatatt-aattatattgaagattgatactccgtttacaaaatgaaatcagaa |
408 |
Q |
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| T |
10306178 |
taaaatactaacattagtactactgtatttacatttttgtactatatgaatattaaattatattgaagattaatactccgtttacaaaatgaaatcagaa |
10306277 |
T |
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| Q |
409 |
gatacaaaaatgctctcatccacaccaaaaccaaccacacgcatgaggcaaa-ggtgacttatatatttctgttacaacttagaacaatgcaacactgtc |
507 |
Q |
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| T |
10306278 |
gatacaaaaatgctctcattcacaccaaaaccaaccacacgcatgaggcaaagggtgact--catatttctgttacaacttagaacaatgcaacactgtc |
10306375 |
T |
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| Q |
508 |
attgcaaaacaacaacactcactatgtatcactgttctc |
546 |
Q |
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| T |
10306376 |
attgcaaaacaacaacactcactatgtatcattgttctc |
10306414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 33564485 - 33564447
Alignment:
| Q |
17 |
caattattattctagcatacaaatttgcacatggagaaa |
55 |
Q |
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| T |
33564485 |
caattattattctagcatacaaatttgcacatggagaaa |
33564447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 1067165 - 1067198
Alignment:
| Q |
230 |
caatggaataaatttccaaccactatacacctga |
263 |
Q |
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| T |
1067165 |
caatggaataaatttccaaccactatacatctga |
1067198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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