View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13518_low_4 (Length: 559)

Name: NF13518_low_4
Description: NF13518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13518_low_4
NF13518_low_4
[»] chr6 (28 HSPs)
chr6 (115-539)||(24723569-24723998)
chr6 (115-539)||(21131432-21131865)
chr6 (21-104)||(24890953-24891036)
chr6 (21-104)||(24730064-24730147)
chr6 (21-104)||(24711347-24711430)
chr6 (21-104)||(29072972-29073055)
chr6 (21-104)||(29105545-29105628)
chr6 (21-81)||(29881644-29881704)
chr6 (21-81)||(29908800-29908860)
chr6 (21-81)||(29928482-29928542)
chr6 (21-81)||(30119062-30119122)
chr6 (21-104)||(29084227-29084310)
chr6 (21-84)||(29904862-29904925)
chr6 (21-81)||(29834424-29834484)
chr6 (21-81)||(29865858-29865918)
chr6 (21-81)||(29897291-29897351)
chr6 (21-104)||(24264459-24264542)
chr6 (21-87)||(29211802-29211868)
chr6 (21-102)||(29115470-29115551)
chr6 (21-102)||(29349307-29349388)
chr6 (21-84)||(29893762-29893825)
chr6 (21-103)||(29367129-29367211)
chr6 (35-81)||(29886520-29886566)
chr6 (25-102)||(29098556-29098633)
chr6 (21-89)||(34785626-34785694)
chr6 (21-75)||(28927718-28927772)
chr6 (25-73)||(24272617-24272665)
chr6 (140-180)||(24723059-24723099)
[»] chr3 (2 HSPs)
chr3 (163-322)||(49580469-49580630)
chr3 (21-99)||(24219947-24220025)
[»] scaffold0237 (2 HSPs)
scaffold0237 (21-81)||(335-395)
scaffold0237 (21-81)||(21552-21612)
[»] scaffold0054 (1 HSPs)
scaffold0054 (21-104)||(54408-54491)
[»] chr1 (1 HSPs)
chr1 (20-99)||(10129345-10129424)
[»] chr2 (1 HSPs)
chr2 (21-109)||(15063578-15063666)


Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 115 - 539
Target Start/End: Original strand, 24723569 - 24723998
Alignment:
Q  115 tctaatcacaatccatggggttgaaaccttatctagcattagttatatataattggtcgaaacctttctaaaaatggggttgattgagtggagggagagg 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24723569 tctaatcacaatccatggggttgaaaccttatctagcattagttatatataattggtcgaaacctttctaaaaatgggattgattgagtggagggagagg 24723668  T
Q  215 tttaagccttatcgtgtgt------tcatagattaattcatggtcaaaagtcattatctagattaatcttctttgtttcctcgtaaagctttaatgaatc 308  Q
    |||||||||||||||||||      |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24723669 tttaagccttatcgtgtgtgaccactcatagattaattcatggtcaaaattcattatctagattaatcttctttgtttcctcgtaaagctttaatgaatc 24723768  T
Q  309 aaatctggcaactgaaaatgtgatgatctttgatggtgtgcgttgagagatcacaaattacataaactttgcttatgatcgaacagtttgcaaattgcac 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  24723769 aaatctggcaactgaaaatgtgatgatctttgatggtgtgcgttgagagatcacaaattacataaacttttcttatgatcaaacagtttgcaaattgcac 24723868  T
Q  409 cgtaaggattgcaattttaattctttcaaagcactcaaagtttttcgtggaaacagtccttgaaacaagaacattatatgagattaaacttagggctgac 508  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24723869 cgtaaggattgcaa-tttaattctttcaaagcactcgaagtttttcgtggaaacagtccttgaaacaagaacattatatgcgattaaacttagggctgac 24723967  T
Q  509 ttgattgtcagtgctagaaacctaagagtgt 539  Q
    ||||| |||||||||||||||||||||||||    
T  24723968 ttgatagtcagtgctagaaacctaagagtgt 24723998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 115 - 539
Target Start/End: Original strand, 21131432 - 21131865
Alignment:
Q  115 tctaatcacaatccatggggttgaaaccttatctagcattagttatatataattggtcgaaacctttctaaaaatggggttgattgagtggagggagagg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||    
T  21131432 tctaatcacaatccatggggttgaaaccttatctagcattagttatatataattggtcgaaacctttctcaaaatgggcttgatagagtggagggagagg 21131531  T
Q  215 tttaagccttatcgtgtgt------tcatagattaattcatggtcaaaagtcattatctagattaatcttctttgtttcctcgtaaagctttaatgaatc 308  Q
    |||||||||||||||||||      |||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||  ||||||| |||    
T  21131532 tttaagccttatcgtgtgtgaccactcatagattaattcatggtcaaaattcattatctagattaatctttttcgtttcctcgtaaatttttaatgtatc 21131631  T
Q  309 aaatctggcaactgaaaatgtgatgatctttgatggtgtgcgttgagagatcacaaattacataaactttgcttatgatcgaacagtttgcaaattgcac 408  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21131632 aaatctggcaactggaaatgtgatgatctttgatggtgtgcgttgagagatcacaaattacataaactttgcttatgatcaaacagtttgcaaattgcac 21131731  T
Q  409 cgtaaggattgcaattttaattctttcaaagcactcaaagtttttcgtggaaacagtccttgaaacaagaacat----tatatgagattaaacttagggc 504  Q
    || ||||||||||| ||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||    |||||| ||||||||||| |||    
T  21131732 cgcaaggattgcaa-tttaattctttcaaagcactcgaagttttttgtggaaacaatccttgaaacaagaacattatatatatgtgattaaacttatggc 21131830  T
Q  505 tgacttgattgtcagtgctagaaacctaagagtgt 539  Q
    ||||||||| |||||||||||||||| ||||||||    
T  21131831 tgacttgatcgtcagtgctagaaaccgaagagtgt 21131865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 24891036 - 24890953
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggtagcacagggatttcatttgg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24891036 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggtagcacagggatttcatttgg 24890953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 24730064 - 24730147
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggtagcacagggatttcatttgg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24730064 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgaactttcatgataaggtggtagcacagggatttcatttgg 24730147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 24711347 - 24711430
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggtagcacagggatttcatttgg 104  Q
    |||||||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||    
T  24711347 tcatcaagcgtctgtgtctcaaaggtcagatccatcaagcattgcactttcataataaggtggtagcattgggttttcatttgg 24711430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 29072972 - 29073055
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggtagcacagggatttcatttgg 104  Q
    |||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| ||   ||||||||||||||    
T  29072972 tcatcaagggtctctgtctcaaaggtcagattcattaagcattgcactttcatgataaggtggttgcgatgggatttcatttgg 29073055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 29105545 - 29105628
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggtagcacagggatttcatttgg 104  Q
    |||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| ||   ||||||||||||||    
T  29105545 tcatcaagggtctctgtctcaaaggtcagattcattaagcattgcactttcatgataaggtggttgcgatgggatttcatttgg 29105628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 29881644 - 29881704
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggt 81  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  29881644 tcatcaagggtctttgtctcaaaggtgacatccatcaagcattgcactttcatgataaggt 29881704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 29908800 - 29908860
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggt 81  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  29908800 tcatcaagggtctttgtctcaaaggtgacatccatcaagcattgcactttcatgataaggt 29908860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 29928482 - 29928542
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggt 81  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  29928482 tcatcaagggtctttgtctcaaaggtgacatccatcaagcattgcactttcatgataaggt 29928542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 30119122 - 30119062
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggt 81  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  30119122 tcatcaagggtctttgtctcaaaggtgacatccatcaagcattgcactttcatgataaggt 30119062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 29084227 - 29084310
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggtagcacagggatttcatttgg 104  Q
    |||||||||||||||||||||||||||| |||||||||||||| | ||||||||| ||| ||||||| |  |||||||||||||    
T  29084227 tcatcaagggtctctgtctcaaaggtcagatccatcaagcatttctctttcatgacaagctggtagcgcttggatttcatttgg 29084310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 29904862 - 29904925
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggt 84  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||    
T  29904862 tcatcaagggtctctgtctcaaaggtgacatccatcaagcattgcactttcatgacaagctggt 29904925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 29834424 - 29834484
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggt 81  Q
    |||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29834424 tcattaagggtttctgtctcaaaggtcagatccatcaagcattgcactttcatgataaggt 29834484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 29865858 - 29865918
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggt 81  Q
    |||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29865858 tcattaagggtttctgtctcaaaggtcagatccatcaagcattgcactttcatgataaggt 29865918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 29897291 - 29897351
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggt 81  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  29897291 tcatcaaggttctctgtctcaaaggtcagatccatcaagcattgcactttcatgacaaggt 29897351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 24264542 - 24264459
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggtagcacagggatttcatttgg 104  Q
    |||| |||||| |||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||| |  |||||||||||||    
T  24264542 tcattaagggtttctgtctcaaaggtcagatccatcaagcattgaactttcatgacaagctggtagcgcttggatttcatttgg 24264459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 29211868 - 29211802
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggtagc 87  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| ||| |||||||    
T  29211868 tcatcaagggtctttgtctcaaaggtcagatccatcaagcattgaactttcatgacaagctggtagc 29211802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 29115470 - 29115551
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggtagcacagggatttcattt 102  Q
    ||||||||||||| |||||||||||||| ||||| |||||||| | |||||||||||||||||| || |  |||||||||||    
T  29115470 tcatcaagggtctttgtctcaaaggtcagatccagcaagcatttctctttcatgataaggtggtggcgcttggatttcattt 29115551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 29349388 - 29349307
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggtagcacagggatttcattt 102  Q
    |||| |||||||| |||||||||||||| || |||||||| ||||||||||||||||||||||| || |  |||||||||||    
T  29349388 tcattaagggtctgtgtctcaaaggtcagattcatcaagccttgcactttcatgataaggtggttgcgcttggatttcattt 29349307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 29893762 - 29893825
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggt 84  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||| |||||||||||| |||||    
T  29893762 tcatcaagggtctttgtcttaaaggtcagatccatcaagcattgctctttcatgataatgtggt 29893825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 29367211 - 29367129
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggtagcacagggatttcatttg 103  Q
    |||| |||||||| |||||||||||||| || |||||||| ||||| ||||||||||||||||| || |  ||||||||||||    
T  29367211 tcattaagggtctgtgtctcaaaggtcagattcatcaagccttgcagtttcatgataaggtggttgcgcttggatttcatttg 29367129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 29886520 - 29886566
Alignment:
Q  35 tgtctcaaaggtcacatccatcaagcattgcactttcatgataaggt 81  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  29886520 tgtctcaaaggtgacatccatcaagcattgcactttcatgataaggt 29886566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 29098556 - 29098633
Alignment:
Q  25 caagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggtagcacagggatttcattt 102  Q
    ||||||||| |||||||||||||| ||||| |||||||| | |||||||||||||||||| || |  |||||||||||    
T  29098556 caagggtctttgtctcaaaggtcagatccagcaagcatttctctttcatgataaggtggtggcgcttggatttcattt 29098633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 34785626 - 34785694
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggtagcac 89  Q
    |||||||||||||||||||||| ||||  ||  |||||||||||||||||||||| ||| |||||||||    
T  34785626 tcatcaagggtctctgtctcaagggtcgtattgatcaagcattgcactttcatgacaagctggtagcac 34785694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 28927772 - 28927718
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatga 75  Q
    ||||||||||||| ||||| |||||||| || |||||||||||||||||||||||    
T  28927772 tcatcaagggtctgtgtcttaaaggtcagattcatcaagcattgcactttcatga 28927718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 24272665 - 24272617
Alignment:
Q  25 caagggtctctgtctcaaaggtcacatccatcaagcattgcactttcat 73  Q
    |||||||| ||||||||||||||| || |||||||||||||||||||||    
T  24272665 caagggtcactgtctcaaaggtcagatacatcaagcattgcactttcat 24272617  T

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Target: chr6; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 24723059 - 24723099
Alignment:
Q  140 accttatctagcattagttatatataattggtcgaaacctt 180  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  24723059 accttatctagcattagttatatagaattggtcgaaacctt 24723099  T

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Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 163 - 322
Target Start/End: Original strand, 49580469 - 49580630
Alignment:
Q  163 ataattggtcgaaacctttctaaaaatggggttgattgagtggagggagaggtttaagccttatcgtgtgt------tcatagattaattcatggtcaaa 256  Q
    |||||||||| |||||||| |||||||||||||||||||||||||    ||||||||||||||||||||||      |||||||||||||||||||||||    
T  49580469 ataattggtcaaaacctttttaaaaatggggttgattgagtggag----aggtttaagccttatcgtgtgtgaccactcatagattaattcatggtcaaa 49580564  T
Q  257 agtcattatctagattaatcttctttgtttcctcgtaaagctttaatgaatcaaatctggcaactg 322  Q
    | ||||||||| || |||| ||  |  |||||||||||||||||||||||||||||| ||||||||    
T  49580565 attcattatcttgagtaatatttctgttttcctcgtaaagctttaatgaatcaaatccggcaactg 49580630  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 24220025 - 24219947
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggtagcacagggatttca 99  Q
    ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||| ||||||  ||||||||    
T  24220025 tcatcaagggtctttgtctcaaaggtgacatccataaagcattgcactttcatgataaggtgttagcacttggatttca 24219947  T

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Target: scaffold0237 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 335 - 395
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggt 81  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  335 tcatcaagggtctttgtctcaaaggtgacatccatcaagcattgcactttcatgataaggt 395  T

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Target: scaffold0237; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 21552 - 21612
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggt 81  Q
    |||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21552 tcattaagggtttctgtctcaaaggtcagatccatcaagcattgcactttcatgataaggt 21612  T

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Target: scaffold0054 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 54491 - 54408
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggtagcacagggatttcatttgg 104  Q
    |||| |||||| |||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||| |  |||||||||||||    
T  54491 tcattaagggtttctgtctcaaaggtcagatccatcaagcattgaactttcatgacaagctggtagcgcttggatttcatttgg 54408  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 10129345 - 10129424
Alignment:
Q  20 atcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggtagcacagggatttca 99  Q
    ||||| |||||||||||||| |||||  |  | | | ||||||||||||||||||| |||||||||||||||||||||||    
T  10129345 atcattaagggtctctgtcttaaaggcgaggttcgtgaagcattgcactttcatgacaaggtggtagcacagggatttca 10129424  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 15063666 - 15063578
Alignment:
Q  21 tcatcaagggtctctgtctcaaaggtcacatccatcaagcattgcactttcatgataaggtggtagcacagggatttcatttgggtcaa 109  Q
    ||||||||||||| ||||| |||||  |  | ||| |||||||| ||||||| |||||||||||||| ||||| ||||| |||| ||||    
T  15063666 tcatcaagggtctttgtcttaaaggcgaggttcataaagcattgtactttcacgataaggtggtagcgcaggggtttcagttggatcaa 15063578  T

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