View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13518_low_5 (Length: 546)

Name: NF13518_low_5
Description: NF13518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13518_low_5
NF13518_low_5
[»] chr5 (2 HSPs)
chr5 (18-527)||(9605729-9606238)
chr5 (23-148)||(9590460-9590587)
[»] chr8 (15 HSPs)
chr8 (18-290)||(6449778-6450050)
chr8 (18-292)||(6456245-6456519)
chr8 (419-477)||(6450311-6450369)
chr8 (151-264)||(6320552-6320665)
chr8 (151-264)||(6331014-6331127)
chr8 (151-236)||(6390101-6390186)
chr8 (151-264)||(7458203-7458316)
chr8 (151-233)||(6273673-6273755)
chr8 (151-264)||(7470605-7470718)
chr8 (25-209)||(6262338-6262522)
chr8 (422-470)||(6456576-6456624)
chr8 (151-234)||(6409353-6409436)
chr8 (151-233)||(6369119-6369201)
chr8 (151-264)||(6287924-6288037)
chr8 (151-251)||(6423379-6423479)
[»] chr2 (3 HSPs)
chr2 (25-254)||(42689355-42689584)
chr2 (420-477)||(42689216-42689273)
chr2 (130-209)||(42692369-42692448)
[»] chr3 (2 HSPs)
chr3 (138-206)||(36745679-36745747)
chr3 (425-500)||(36745548-36745623)
[»] chr1 (1 HSPs)
chr1 (142-212)||(36926123-36926193)


Alignment Details
Target: chr5 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Complemental strand, 9606238 - 9605729
Alignment:
18 catcttaggccaccatggcttgtctttcaagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgtctttttgtactgcctca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9606238 catcttaggccaccatggcttgtctttcaagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgtctttttgtactgcctca 9606139  T
118 tcagttggataatacaaggaaacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaa 217  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9606138 tcatttggataatacaaggaaacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaa 9606039  T
218 gacgaaggccatgtggagacgatggatcctcaacggctaatcctctatatcaagcaaacaatttcttatcaataagagttaaaattttgttatcaattta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
9606038 gacgaaggccatgtggagacgatggatcctcaacggctaatcctctatatcaagcaaacaatttcttatcaataacagttaaaattttgttatcaattta 9605939  T
318 gcgaccaattttttaaattggccgctagattggtggagaacaacgtatttccaacactagcatagcataattgcaatatgcatccaatttagatggtggc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9605938 gcgaccaattttttaaattggccgctagattggtggagaacaacgtatttccaacactagcatagcataattgcaatatgcatccaatttagatggtggc 9605839  T
418 gaattacctcttgataagatcagccggtaatgcttgatcagtgaaaacccaattcttgtatgctgctgatgacatctcaacagaattcggcccaggtaaa 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9605838 gaattacctcttgataagatcagccggtaatgcttgatcagtgaaaacccaattcttgtatgctgctgatgacatctcaacagaattcggcccaggtaaa 9605739  T
518 aatgtttcct 527  Q
    ||||||||||    
9605738 aatgtttcct 9605729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 9590587 - 9590460
Alignment:
23 taggccaccatggcttgtctttcaagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgtctttt--tgtactgcctcatca 120  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||  | |  ||||||||||    
9590587 taggccaccattgcttgtcttttaagtcaccatgacccttttctacaacttcctttcaccaagtttgtacttcagtgtcttttattcttttgcctcatca 9590488  T
121 gttggataatacaaggaaacatagtctt 148  Q
    ||||| ||||||||||| |||| |||||    
9590487 gttgggtaatacaaggagacatggtctt 9590460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 8e-81; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 6449778 - 6450050
Alignment:
18 catcttaggccaccatggcttgtctttcaagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgtctttttgtactgcctca 117  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||  |||| | ||||||||||||||| || ||||||    
6449778 catcttaggccaccatggcttgtctttcaagtcaccgtgacccttttctacagcttccttccaccatttttgaatttcagtgtctttttgcaccgcctca 6449877  T
118 tcagttggataatacaaggaaacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaa 217  Q
    || |||||||| || ||||| ||||||||||||||||||| |||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||    
6449878 tctgttggatagtataaggagacatagtcttggacccatgccttaatagcatcccatatttctagtccatcaacagcataagggtagtcctctatcacaa 6449977  T
218 gacgaaggccatgtggagacgatggatcctcaacggctaatcctctatatcaagcaaacaatttcttatcaat 290  Q
    | |||||||| || || || || ||||||||||| |||||||||||  ||||| |||||||| | ||||||||    
6449978 gtcgaaggccgtgaggggaagagggatcctcaacagctaatcctctgaatcaaacaaacaatatgttatcaat 6450050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 6456245 - 6456519
Alignment:
18 catcttaggccaccatggcttgtctttcaagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgtctttttgtactgcctca 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||| ||| | |||    
6456245 catcttaggccaccatggcttgtctttcaagtcaccatgacccttttctacagcttccttccaccaagtttgtagttcagtgtccttttgcactacttca 6456344  T
118 tcagttggataatacaaggaaacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaa 217  Q
    || ||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||||| || ||||||||||| |||||||||||||| || | | |||    
6456345 tctgttggataatataaggagacatagtcttgaacccatgccttaatagcatcccatatttctagtccatcaacagcataagggtagtcttctaacgcaa 6456444  T
218 gacgaaggccatgtggagacgatggatcctcaacggctaatcctctatatcaagcaaacaatttcttatcaataa 292  Q
    ||||||| ||||| || || || || |||||||| |||| ||||||  |||||||| ||||||| ||||||||||    
6456445 gacgaagtccatggggggaagacgggtcctcaacagctagtcctctgaatcaagcagacaatttgttatcaataa 6456519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 419 - 477
Target Start/End: Original strand, 6450311 - 6450369
Alignment:
419 aattacctcttgataagatcagccggtaatgcttgatcagtgaaaacccaattcttgta 477  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
6450311 aattacctcttgataagatcagctggtaatgcttgatcagtgaaaacccaattcttgta 6450369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 6320552 - 6320665
Alignment:
151 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaa 250  Q
    ||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||| |||| ||| ||||  |||||||| || | |||||||||||    
6320552 acccatgacttgatagcatcccatatctctagtccatcagcagcataagggtagtcctctatcagaaggcgaattccatgtggggaagttggatcctcaa 6320651  T
251 cggctaatcctcta 264  Q
    | || | |||||||    
6320652 cagccactcctcta 6320665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 6331014 - 6331127
Alignment:
151 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaa 250  Q
    ||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||| |||| ||| ||||  |||||||| || | |||||||||||    
6331014 acccatgacttgatagcatcccatatctctagtccatcagcagcataagggtagtcctctatcagaaggcgaattccatgtggggaagttggatcctcaa 6331113  T
251 cggctaatcctcta 264  Q
    | || | |||||||    
6331114 cagccactcctcta 6331127  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 6390101 - 6390186
Alignment:
151 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggaga 236  Q
    |||||||||||||||||| |||||||||| ||||||||||| ||||| || || ||||| |||| |||||| || |||||||||||    
6390101 acccatgacttaatagcagcccatatctctagtccatcaacagcatatggataatcctctatcagaagacgcagaccatgtggaga 6390186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 7458203 - 7458316
Alignment:
151 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaa 250  Q
    |||||||||||||||||| |||||||||| |||||||||   |||||||| |||||||| |||| ||| ||||  ||||||||||| | |||||||| ||    
7458203 acccatgacttaatagcagcccatatctctagtccatcagaagcataaggatagtcctctatcagaagtcgaacaccatgtggagaagctggatcctgaa 7458302  T
251 cggctaatcctcta 264  Q
    | || | |||||||    
7458303 ctgccactcctcta 7458316  T

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Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 6273673 - 6273755
Alignment:
151 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtgg 233  Q
    ||||||||||||||| || |||||||||| | ||||||| | ||||||||||||||||| |||| ||| |||||||| |||||    
6273673 acccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctctatcagaaggcgaaggccgtgtgg 6273755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 7470605 - 7470718
Alignment:
151 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaa 250  Q
    |||||||||||||||||| |||||||||| |||||||||    ||||||| |||||||| |||| ||| ||||  ||||||||||| | |||||||| ||    
7470605 acccatgacttaatagcagcccatatctctagtccatcagaaacataaggatagtcctctatcagaagtcgaacaccatgtggagaagctggatcctgaa 7470704  T
251 cggctaatcctcta 264  Q
    | || | |||||||    
7470705 ctgccactcctcta 7470718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 209
Target Start/End: Original strand, 6262338 - 6262522
Alignment:
25 ggccaccatggcttgtctttcaagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgtctttttgtactgcctcatcagttg 124  Q
    ||||||||||||| |||||||  ||||||||||||   |||||||||||| |||||||||| ||| | ||||| ||| |  || | |   ||||| | ||    
6262338 ggccaccatggctcgtctttcttgtcaccatgacccacttctacaacttctttccaccaagattggagttcagagtcctgctgaattttttcatctgatg 6262437  T
125 gataatacaaggaaacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctc 209  Q
       | || | ||| || |||||||| ||||||| ||||||||||||||| || || ||||||||||| ||||||||||| |||||    
6262438 tgaagtatatggagacgtagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctc 6262522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 422 - 470
Target Start/End: Original strand, 6456576 - 6456624
Alignment:
422 tacctcttgataagatcagccggtaatgcttgatcagtgaaaacccaat 470  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||    
6456576 tacctcttgataagatcagccggtaatgcttggtcggtgaaaacccaat 6456624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 6409353 - 6409436
Alignment:
151 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtgga 234  Q
    |||||||||||||||||| |||||||||| | |||||||   |||||||| || ||||| |||| ||| ||||  |||||||||    
6409353 acccatgacttaatagcagcccatatctctaatccatcagtagcataaggataatcctctatcaaaaggcgaacaccatgtgga 6409436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 6369119 - 6369201
Alignment:
151 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtgg 233  Q
    |||||||||||||||||| |||||||||| ||||||||    ||||| || || ||||| |||| |||||| || ||||||||    
6369119 acccatgacttaatagcagcccatatctctagtccatctgaagcatatggataatcctctatcagaagacgcagaccatgtgg 6369201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 6287924 - 6288037
Alignment:
151 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaa 250  Q
    |||||||||||||| ||   ||||||||| | ||||||| | ||||||||||| || |  |||| ||| |||||||| ||||| || | |||||||||||    
6287924 acccatgacttaattgctgtccatatctctaatccatcagcagcataagggtaatcttttatcagaaggcgaaggccgtgtggggaagttggatcctcaa 6288023  T
251 cggctaatcctcta 264  Q
    | || | |||||||    
6288024 cagccactcctcta 6288037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 6423379 - 6423479
Alignment:
151 acccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatggatcctcaa 250  Q
    ||||||| ||| |||||| |||||||||| ||||||||    |||||||| || ||||| |||| ||| |||| ||| ||||| || | |||||||||||    
6423379 acccatgtcttgatagcagcccatatctctagtccatccgaagcataaggataatcctcaatcaaaaggcgaatgccgtgtggtgaagctggatcctcaa 6423478  T
251 c 251  Q
    |    
6423479 c 6423479  T

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Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 25 - 254
Target Start/End: Complemental strand, 42689584 - 42689355
Alignment:
25 ggccaccatggcttgtctttcaagtcaccatgacctttttctacaacttccttccaccaagtttgtaattcagtgtctttttgtactgcctcatcagttg 124  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||  ||| |  ||||  || ||||  |   | |  || ||||    
42689584 ggccaccatggcttgtctttcaaatcaccatgacctttctctacaacttctttccaccaatgttgaagctcagaatcatttttgatatcattgtctgttg 42689485  T
125 gataatacaaggaaacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaag 224  Q
     ||||||||  || ||||| ||||| |||||||  |||||||    ||||||||| | ||||||||| ||||||||||||||||| |||| |||||||||    
42689484 cataatacactgagacataatcttgtacccatgttttaatagttgtccatatctctaatccatcaacagcataagggtagtcctctatcagaagacgaag 42689385  T
225 gccatgtggagacgatggatcctcaacggc 254  Q
     || | ||| ||||||||||||||||||||    
42689384 tccgtatggggacgatggatcctcaacggc 42689355  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 477
Target Start/End: Complemental strand, 42689273 - 42689216
Alignment:
420 attacctcttgataagatcagccggtaatgcttgatcagtgaaaacccaattcttgta 477  Q
    |||||||||||||||||||||| || |  |||||||||| ||||||||||||||||||    
42689273 attacctcttgataagatcagctggaagggcttgatcagggaaaacccaattcttgta 42689216  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 42692369 - 42692448
Alignment:
130 tacaaggaaacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctc 209  Q
    |||||||| ||||||||||| ||||||| ||| || ||| |||||||||| | |||||||   ||||||||||| |||||    
42692369 tacaaggagacatagtcttgaacccatgtctttattgcagcccatatctctaatccatcatgagcataagggtaatcctc 42692448  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 36745747 - 36745679
Alignment:
138 aacatagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtc 206  Q
    |||||||||||  ||||||| ||||||||||||||||||||| | ||||||||| ||| ||||||||||    
36745747 aacatagtctttcacccatgccttaatagcatcccatatctctaatccatcaacagcaaaagggtagtc 36745679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 425 - 500
Target Start/End: Complemental strand, 36745623 - 36745548
Alignment:
425 ctcttgataagatcagccggtaatgcttgatcagtgaaaacccaattcttgtatgctgctgatgacatctcaacag 500  Q
    ||||||||||||||||| |||| |||||| ||||  |||||||||| ||||||  |||| || |||||||||||||    
36745623 ctcttgataagatcagcaggtagtgcttggtcaggaaaaacccaatccttgtaaactgcagacgacatctcaacag 36745548  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 36926193 - 36926123
Alignment:
142 tagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgat 212  Q
    |||||||  ||||||| ||| || |||  ||| ||||| ||||||||||||||||||||||| ||||||||    
36926193 tagtctttaacccatgtcttgatggcaaaccaaatctccagtccatcaactgcataagggtaatcctcgat 36926123  T

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