View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13518_low_8 (Length: 428)

Name: NF13518_low_8
Description: NF13518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13518_low_8
NF13518_low_8
[»] chr5 (9 HSPs)
chr5 (23-415)||(8528045-8528448)
chr5 (62-415)||(8534609-8534974)
chr5 (62-415)||(1600864-1601221)
chr5 (279-401)||(9075167-9075289)
chr5 (64-343)||(8640663-8640948)
chr5 (262-404)||(8548785-8548929)
chr5 (262-312)||(9002563-9002613)
chr5 (262-325)||(8677547-8677610)
chr5 (263-349)||(8636299-8636385)
[»] chr4 (1 HSPs)
chr4 (23-415)||(9442212-9442598)
[»] chr7 (1 HSPs)
chr7 (66-352)||(48362324-48362618)
[»] chr1 (2 HSPs)
chr1 (297-415)||(26324320-26324446)
chr1 (218-343)||(5130051-5130177)


Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 23 - 415
Target Start/End: Complemental strand, 8528448 - 8528045
Alignment:
Q  23 taattacatctttggctttaatagttaatgggnnnnnnntcacgtggacacaatcttttgttactaatcacatcttataaattttctttacactttcgtg 122  Q
    ||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  8528448 taattacatctttggctttaatagttaatgggaaaaaaatcatgtggacacaatcttttgttactaattacatcttataaattttctttatactttcgtg 8528349  T
Q  123 ttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggctgatcca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528348 ttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggctgatcca 8528249  T
Q  223 tcccctgcaatttgcagttttagctactattacttaaccaa----------tattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaa 312  Q
    |||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528248 tcccctgcaatttgcagttttagctactattacttaaccaatattccccaatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaa 8528149  T
Q  313 aggaggttctttctctgtctcaacagattgtttgagacttg-aagttcatgcttttcatcatcttatagtgacttgataaatatatcttcctccttatct 411  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528148 aggaggttctttctctgtctcaacagattgtttgagacttgaaagttcatgcttttcatcatcttatagtgacttgataaatatatcttcctccttatct 8528049  T
Q  412 gatg 415  Q
    ||||    
T  8528048 gatg 8528045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 62 - 415
Target Start/End: Complemental strand, 8534974 - 8534609
Alignment:
Q  62 tcacgtggacacaatcttttgttactaatcacatcttataaattttctttacactttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtat 161  Q
    |||||||||||||||||||| |||||||| ||||||||||| ||| ||||| ||||||||||||| ||||| | |||||||||||||||||||||||||     
T  8534974 tcacgtggacacaatcttttattactaattacatcttataactttcctttatactttcgtgttgacggaggagaagaaaatgaatggacagttgttgtaa 8534875  T
Q  162 tgtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggctgatccatcccctgcaatttgcagttttagctactattacttaacc 261  Q
    | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8534874 tctcagttatttggatcttctttagttgctaggtagtaaatagtttcttgaggctgatccatcccctgtaatttgcagttttagctactattacttaacc 8534775  T
Q  262 aa----------tattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctg---tctcaacagattgtttgag 348  Q
    ||          |||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| ||   ||||||| |||||||||||    
T  8534774 aatattccccaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaaaggaagttctttctttgcgatctcaac-gattgtttgag 8534676  T
Q  349 acttgaagttcatgcttttcatcatcttatagtgacttgataaatatatcttcctccttatctgatg 415  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  8534675 acttgaagttcatgtttttcatcatcttatggtgacttgataaatatatctgcctccttatctgatg 8534609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 62 - 415
Target Start/End: Original strand, 1600864 - 1601221
Alignment:
Q  62 tcacgtggacacaatcttttgttactaatcacatcttataaattttctttacactttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtat 161  Q
    |||||||||| |||||||||||||||||| ||||||   |||||| || || ||||||||||||||||||| | ||||||||    |||||||||||||     
T  1600864 tcacgtggacgcaatcttttgttactaattacatct---aaatttcctatatactttcgtgttgatggaggaggagaaaatg----gacagttgttgtaa 1600956  T
Q  162 tgtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggctgatccatcccctgcaatttgcagttttagctactattacttaacc 261  Q
    |||| |||||||| |  ||||| |||||||| ||||||||| ||||||| ||  |  |||||||||||||||||||||||||||||| ||||||||||||    
T  1600957 tgtcagttatttgaacgttctt-agttgctaagtagtaaattgtttcttaagtgtattccatcccctgcaatttgcagttttagctaatattacttaacc 1601055  T
Q  262 ----------aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgagact 351  Q
              |||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| | ||| ||||||||||||| || ||||| |||||    
T  1601056 attattcccaaatattgttttaatttatataggtgtgcaaagtttaaattgcgggaagaaacggaaggtctatctctgtctcaactgactgtttaagact 1601155  T
Q  352 t--gaagttcatgcttttcatcatcttatagtgacttgataaatatatcttcctccttatctgatg 415  Q
    |   || | |||| ||| ||||||||| | ||||||||| |||| ||||||| ||||  |||||||    
T  1601156 tagaaactacatgttttccatcatcttttggtgacttgaaaaatttatcttcatcctcgtctgatg 1601221  T

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Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 279 - 401
Target Start/End: Original strand, 9075167 - 9075289
Alignment:
Q  279 tataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgagacttgaagttcatgcttttcatcatcttat 378  Q
    |||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||| |||||||||||||||| ||||  ||| ||||||||||||||     
T  9075167 tataggtgtgcaaagtttaaattgcgggaagaaagggacgttctttctctgtttcaagagattgtttgagacttaaagtatatgtttttcatcatcttac 9075266  T
Q  379 agtgacttgataaatatatcttc 401  Q
     ||||||||||||||| ||||||    
T  9075267 ggtgacttgataaataaatcttc 9075289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 64 - 343
Target Start/End: Complemental strand, 8640948 - 8640663
Alignment:
Q  64 acgtggacacaatcttttgttactaatcacatcttataaattttctttacactttcg-tgttgatggaggtgtagaaaatgaatggacagttgttgtatt 162  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| ||||| ||||||  ||||||  | || | | |||||| ||    |||||||||| |    
T  8640948 acgtggacacaatctttcgttactaatgacatcttataaatttcctttatactttccatgttgacagcggaggataaaatggat----agttgttgtaat 8640853  T
Q  163 gtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggctgatccatcccctgcaatttgcagttttagctactattacttaacca 262  Q
     || ||| | ||||||| ||| ||||| || ||||||||| |||| |  || ||  ||||||| ||||||||| |||||||||||| |||||||||||||    
T  8640852 ttcagttttatggatctgcttaagttgttaagtagtaaat-gtttttcaagactattccatcctctgcaattttcagttttagctaatattacttaacca 8640754  T
Q  263 ----------atattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgt 343  Q
              ||||||||||||||| |||||||||||||||||||||||| | | |||||| || ||| ||||  ||||||||| ||||||    
T  8640753 ttgttccctaatattgttttaatttatataggtgtgcaaagtttaaattgggagaagaaaatgaagttttttccttgtctcaacggattgt 8640663  T

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Target: chr5; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 262 - 404
Target Start/End: Original strand, 8548785 - 8548929
Alignment:
Q  262 aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgagacttgaagttcat 361  Q
    |||||||||||||||| |||||||||| |||||||||||| | || |||||| || ||| ||||  |||||||||||||||||||||||||||    |||    
T  8548785 aatattgttttaatttatataggtgtgtaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaacagattgtttgagacttgacacacat 8548884  T
Q  362 g--cttttcatcatcttatagtgacttgataaatatatcttcctc 404  Q
    |   | ||||| | ||||| ||||| |||||||||||||||||||    
T  8548885 ggattcttcattaccttatggtgacatgataaatatatcttcctc 8548929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 9002613 - 9002563
Alignment:
Q  262 aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaa 312  Q
    ||||||||| |||||| |||||||||||||||||||||||| ||| |||||    
T  9002613 aatattgttgtaatttatataggtgtgcaaagtttaaattgagggaagaaa 9002563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 325
Target Start/End: Complemental strand, 8677610 - 8677547
Alignment:
Q  262 aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttc 325  Q
    |||||||||||||||  ||||||||||||||  || ||||||||| |||||| || ||||||||    
T  8677610 aatattgttttaattgatataggtgtgcaaatgttgaattgcgggaagaaaatgaagttctttc 8677547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 349
Target Start/End: Complemental strand, 8636385 - 8636299
Alignment:
Q  263 atattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgaga 349  Q
    |||||||||| |||  ||||||||||||||  || |||||| || |||||| || ||||||||  |||||||||| | |||||||||    
T  8636385 atattgttttgattgatataggtgtgcaaatgttgaattgccggaagaaaatgaagttctttccttgtctcaacaaactgtttgaga 8636299  T

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Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 23 - 415
Target Start/End: Complemental strand, 9442598 - 9442212
Alignment:
Q  23 taattacatctttggctttaatagttaatgggnnnnnnntcacgtggacacaatcttttgttactaatcacatcttataaattttctttacactttcgtg 122  Q
    ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| |||||||||||||||||           |||    
T  9442598 taattacatctttggctttaatagttaatgggaaaaaaatcacgtggacacaatcttttgttactaattacatcttataaattttc-----------gtg 9442510  T
Q  123 ttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggctgatcca 222  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9442509 ttgatggaggcgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctatgtagtaaatagtttcttgaggctgatcca 9442410  T
Q  223 tcccctgcaatttgcagttttagctactattacttaaccaa----------tattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaa 312  Q
    |||||||||||||||||||||||||||||||| ||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9442409 tcccctgcaatttgcagttttagctactattaattaaccaatattcctcaatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaa 9442310  T
Q  313 aggaggttctttctctgtctcaacagattgtttgagacttg-aagttcatgcttttcatcatcttatagtgacttgataaatatatcttcctccttatct 411  Q
    |||||||||||||||||||||||      |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9442309 aggaggttctttctctgtctcaa------gtttgagatttgaaagttcatgcttttcatcatcttatagtgacttgataaatatatcttcctccttatct 9442216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 66 - 352
Target Start/End: Original strand, 48362324 - 48362618
Alignment:
Q  66 gtggacacaatcttttgttactaatcacatcttataaattttctttacactttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtc 165  Q
    |||| ||||||| || ||||| ||| ||||||||||||||| ||||| |||||||||||||||||||   |||||||||||||  |||||||||| ||||    
T  48362324 gtgggcacaatccttcgttaccaattacatcttataaatttcctttatactttcgtgttgatggaggacgagaaaatgaatgggaagttgttgtaatgtc 48362423  T
Q  166 ggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggctgatccatcccctgcaatttgcagttttagctactattacttaacc---- 261  Q
     |||||||||| |||| ||||||| ||  ||||||||||||| | ||| ||  ||||||| |||||||||||||||||||||| ||||||||||||        
T  48362424 agttatttggaccttc-ttagttggtaattagtaaatagttt-tcgagactattccatcctctgcaatttgcagttttagctaatattacttaaccatta 48362521  T
Q  262 ------aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgagactt 352  Q
          ||||||| |||||||| ||||||||||||||||||||||||| || ||||||||| | | | |||||||||||||||||||||||||||||    
T  48362522 ttcctgaatattggtttaatttatataggtgtgcaaagtttaaattgcaggaagaaaaggaaggtatatctctgtctcaacagattgtttgagactt 48362618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 297 - 415
Target Start/End: Original strand, 26324320 - 26324446
Alignment:
Q  297 aaattgcggggagaaaaggaggttctttctctgtctcaac-------agattgtttgagacttgaa-gttcatgcttttcatcatcttatagtgacttga 388  Q
    |||||||||| ||||||||| |||||||||||||||||||       ||||| ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  26324320 aaattgcgggaagaaaaggaagttctttctctgtctcaactctcaacagattttttgagacttgaaagttcatgcttttcatcatcttatggtgacttga 26324419  T
Q  389 taaatatatcttcctccttatctgatg 415  Q
    |||||||||||||||||||||||||||    
T  26324420 taaatatatcttcctccttatctgatg 26324446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 218 - 343
Target Start/End: Complemental strand, 5130177 - 5130051
Alignment:
Q  218 atccatcccctgcaatttgcagttttagctactattacttaaccaatattgtt-ttaatttctataggtgtgcaaagtttaaattgcggggagaaaagga 316  Q
    |||| |||||||||| ||||||||||||||| |||||| |||  | | || || || |||| || ||||||||||||||||||||||||| |||||| ||    
T  5130177 atccctcccctgcaaattgcagttttagctagtattacataaatattgtttttatttatttatacaggtgtgcaaagtttaaattgcgggaagaaaatga 5130078  T
Q  317 ggttctttctctgtctcaacagattgt 343  Q
     ||| ||||  |||| |||||||||||    
T  5130077 agttttttccttgtcccaacagattgt 5130051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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