View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13518_low_9 (Length: 411)
Name: NF13518_low_9
Description: NF13518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13518_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 13 - 395
Target Start/End: Original strand, 43654037 - 43654419
Alignment:
| Q |
13 |
atgtttgaatctcctctaattatattcaaaatgagaaagaaactaaattgtgtttatattcaattctaattgaacaattacagttagttgttataaaaaa |
112 |
Q |
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| T |
43654037 |
atgtttgaatctcctctaattatattcaaaatgagaaagaaactaaattgtgtttatattcaattctaattgaacaattacagttagttgttataaaaaa |
43654136 |
T |
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| Q |
113 |
tttacaatcttatataattgaaggtatctatttttgttgatgacttcttcagaaccgaatccctacaaaggataatctataattcaacgcgatatacttt |
212 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
43654137 |
tttacaatcatatataattgaaggtatctatttttgttgatggcttcttcagaaccgaatccctacaaaggataatctataattcaacgtggtatacttt |
43654236 |
T |
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| Q |
213 |
aacaaaatatgaatgtgtgttgcaggctacagaaactttgaatcacttattttttggatacgactttgcttgtgcgtggattatttgaattcatgtacac |
312 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43654237 |
aacaaaatatgaatgtgtgttgcaggctacggaaactttgaatcacttatttttcggatgcgactttgcttgtgcgtggattatttgaattcatgtacac |
43654336 |
T |
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| Q |
313 |
acaagcaagtatttataccaatgtctttagacattttacacaggtgttgataatgccgatgcaaaagtatcatgtgtcaaact |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43654337 |
acaagcaagtatttataccaatgtctttagacattttacacatgtgttgataatgccgatgcaaaagtatcatgtgtcaaact |
43654419 |
T |
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