View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13519_high_3 (Length: 346)
Name: NF13519_high_3
Description: NF13519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13519_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 44672588 - 44672268
Alignment:
| Q |
18 |
acctcctacgttaaattgaatttcattttatggactgcctataacaatgacgacctattttggtaattcaaacatgtttacgtgccatttgcctcttgca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44672588 |
acctcctacgttaaattgaatttcattttatggactgcctataacaatgacgacctattttggtaattcaaacatgtttccgtgccatttgcctcttgca |
44672489 |
T |
|
| Q |
118 |
tacaattgattaaaataaaaacaacaaattctctaaatataagattcaacaaccacagaaaccaacaccttaaatcaatataatgctgagctggttctct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44672488 |
tacaattgattaaaataaaaacaacaaattctctaaatataagattcaacaaccacagaaaccaacaccttaaatcaatataatgctgagctggttctct |
44672389 |
T |
|
| Q |
218 |
caaagtttatgtacaattatagtatataaacttgttttcttcatgtattttctatcacaaatccccacagttcaatatcccctgccaaagcagggggtga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44672388 |
caaagtttatgtacaattatagtatataaacttgttttcttcatgtattttctatcacaaatccccacagttcaatatcccctgccaaagcagggggtga |
44672289 |
T |
|
| Q |
318 |
ttataaccttttattcatctc |
338 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
44672288 |
ttataaccttttattcatctc |
44672268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University