View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13519_low_3 (Length: 352)
Name: NF13519_low_3
Description: NF13519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13519_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 336
Target Start/End: Complemental strand, 2841005 - 2840685
Alignment:
| Q |
12 |
atcatcatgcttccttgtgtctcctttgaatacctgtcatattcaagagctctttaactagaaaatatattgagaatgaatgacataaaaatgagccaca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2841005 |
atcatcatgcttccttgtgtctcctttgcatccctgtcatattcaagagctctttaactagaaagtatattgagaatgaatgacataaaaatgagccaca |
2840906 |
T |
|
| Q |
112 |
aagatttttcttccttggtggtaccacaaaagcaattaagggcctttttgttttaaaaaatatcaatatatattttctgttcttacttggaatcacaaaa |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
2840905 |
aagatttttcttccttggtgttaccacaaaagcaattaagggcctttttgtttt----aatatca--atatattctctgttcttacttggaatcacaaaa |
2840812 |
T |
|
| Q |
212 |
atgttatcttatttttgtatttataggtgggag--nnnnnnnntgaaacaaacagaannnnnnnccttaaaccgaacaactccgagattttcactttgtc |
309 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2840811 |
atgttatcttatttttgtatttatagatgggagaaaaaaaaaatgaaacaaacagaatttttttccttaaaccgaacaactccgagattttcactttgtc |
2840712 |
T |
|
| Q |
310 |
tgctaactaaagagtagatgtcatgat |
336 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
2840711 |
tgctaactaaagagtagatgtcatgat |
2840685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 336
Target Start/End: Complemental strand, 2845692 - 2845372
Alignment:
| Q |
12 |
atcatcatgcttccttgtgtctcctttgaatacctgtcatattcaagagctctttaactagaaaatatattgagaatgaatgacataaaaatgagccaca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2845692 |
atcatcatgcttccttgtgtctcctttgcatccctgtcatattcaagagctctttaactagaaagtatattgagaatgaatgacataaaaatgagccaca |
2845593 |
T |
|
| Q |
112 |
aagatttttcttccttggtggtaccacaaaagcaattaagggcctttttgttttaaaaaatatcaatatatattttctgttcttacttggaatcacaaaa |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
2845592 |
aagatttttcttccttggtgttaccacaaaagcaattaagggcctttttgtttt----aatatca--atatattctctgttcttacttggaatcacaaaa |
2845499 |
T |
|
| Q |
212 |
atgttatcttatttttgtatttataggtgggag--nnnnnnnntgaaacaaacagaannnnnnnccttaaaccgaacaactccgagattttcactttgtc |
309 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2845498 |
atgttatcttatttttgtatttatagatgggagaaaaaaaaaatgaaacaaacagaatttttttccttaaaccgaacaactccgagattttcactttgtc |
2845399 |
T |
|
| Q |
310 |
tgctaactaaagagtagatgtcatgat |
336 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
2845398 |
tgctaactaaagagtagatgtcatgat |
2845372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 2832402 - 2832553
Alignment:
| Q |
12 |
atcatcatgcttccttgtgtctcctttgaatacctgtcatattcaagagctctttaactagaaaatatattgagaatgaatgacataaaaatgagccaca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2832402 |
atcatcatgcttccttgtgtctcctttgaatacctgtcatattcaagagctctttaactagaaaatatattgagaatgaatgacataaaaatgagccacg |
2832501 |
T |
|
| Q |
112 |
aagatttttcttccttggtggtaccacaaaagcaattaagggcctttttgtt |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
2832502 |
aagatttttcttccttggtggtaccacaaaggcaattaagggcatttttgtt |
2832553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 2832556 - 2832607
Alignment:
| Q |
189 |
tgttcttacttggaatcacaaaaatgttatcttatttttgtatttataggtg |
240 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||| ||||||||||||||||||| |
|
|
| T |
2832556 |
tgttcatacttggaatcacaaaactgtcatctgatttttgtatttataggtg |
2832607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 336
Target Start/End: Original strand, 2832642 - 2832702
Alignment:
| Q |
277 |
taaaccgaacaactccgagatttt-cactttgtctgctaactaaagagtagatgtcatgat |
336 |
Q |
| |
|
|||||||| ||| ||| ||||||| ||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
2832642 |
taaaccgatcaagtcctagatttttcactttgtctgctaactaaagtgtagatgtcgtgat |
2832702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University