View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13519_low_5 (Length: 248)
Name: NF13519_low_5
Description: NF13519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13519_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 3017688 - 3017918
Alignment:
| Q |
1 |
tggtgtttggaaatttaatctcattctttttaatagattgtgattatgaaactgaaacttatttcatttcattatggattgcttataattgtcgtgatca |
100 |
Q |
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| T |
3017688 |
tggtgtttggaaatttaatctcattctttttaatagattgtgattatgaaactgaaacttatttcatttcattatggattgcttataattgtcgtgatca |
3017787 |
T |
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| Q |
101 |
ctatcattatgattcaggtggtttcgccaattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaacaaagcttataatacctatttgcggcat |
200 |
Q |
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| T |
3017788 |
ctatcattatgattcaggtggtttcgccaattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaacaaagcttataatacctatttgcggcat |
3017887 |
T |
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| Q |
201 |
gctgtgaatatgttgggtactatggatgatg |
231 |
Q |
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| T |
3017888 |
gctgtgaatatgttgggtactatggttgatg |
3017918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 3020793 - 3021018
Alignment:
| Q |
5 |
gtttggaaatttaatctcattctttttaatagattgtgattatgaaactgaaacttatttcatttcattatggattgcttataattgtcgtgatcactat |
104 |
Q |
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| T |
3020793 |
gtttggaaatttaatctcattctttttaatagattgtgattatgaaactgaaacttatttcatttcattatggattgcttataattgtcgtgatcactat |
3020892 |
T |
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| Q |
105 |
cattatgattcaggtggtttcgccaattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaacaaagcttataatacctatttgcggcatgctg |
204 |
Q |
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| T |
3020893 |
cattatgattcaggttgtttcaccaaatgctcgaaagttgggggaaagtgttcttcaaaagtgtgcaacaaggcttataatacctgtttgcggtatgttg |
3020992 |
T |
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| Q |
205 |
tgaatatgttgggtactatggatgat |
230 |
Q |
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| T |
3020993 |
tgaatatgttgggtactatggttgat |
3021018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 3033675 - 3033830
Alignment:
| Q |
21 |
tcattctttttaatagattgtgattatgaaactgaaacttatttcatttcattatggattgcttataattgtcgtgatcactatcattatgattcaggtg |
120 |
Q |
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| T |
3033675 |
tcattcttgttaataggtcgtgattgttaaactgaaacatatttcatt-----atgaatttcttataattgtcatggctgctgtcatcatgattcaggag |
3033769 |
T |
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| Q |
121 |
gtttcgccaattgctcgaaagttgggaaaaagtgttcttcaaaagtgtgcaacaaagctta |
181 |
Q |
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| T |
3033770 |
gttttgccaattgctcgaaagttgggggaaagagtccttgaaagttgtgcaacaaggctta |
3033830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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