View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351R-Insertion-1 (Length: 1095)
Name: NF1351R-Insertion-1
Description: NF1351R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351R-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 553; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 75 - 759
Target Start/End: Complemental strand, 51527901 - 51527211
Alignment:
| Q |
75 |
cagttattataactggaaa---gatagagaaaacatgcttaccggttctcttgattcttccatcatcatccacttcctcatttgtgtactgtctgataga |
171 |
Q |
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| T |
51527901 |
cagttattataactggaaattagatagagaaaacatgcttaccggttctcttgattcttccatcatcatccacttcctcatttgtgtactgtttgataga |
51527802 |
T |
|
| Q |
172 |
cgcatccttttcagcctccatttagatacagattcagattcccactctcaaattaattaactcacaaaccctgtcaagaattagagcttaagcatcaaaa |
271 |
Q |
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| T |
51527801 |
cacatccttttcagcctccatttatatacagattcagattcccactctcaaattaattaactcacaaaccctgtcaagaattagagcttaagcatcaaaa |
51527702 |
T |
|
| Q |
272 |
acaaaattgagnnnnnnnn-catcacatataaatttattaactctctaataagcacaaggaataatattgatgttgcatcattacaatatttattcacca |
370 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51527701 |
acaaaattgagaaaaaaaaacatcacatataaatttattaactctctaataagcacaaggaataatattgatgttgcatcattacaatatttattcacca |
51527602 |
T |
|
| Q |
371 |
ttggattaaggtgccctccaaggtgcgcaaccttatcagattgcgtaatgaacatgtttcaaaccagaaagccaaacagacaaatatcgtgtctaagtat |
470 |
Q |
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| T |
51527601 |
ttggattaaggtgccctctaaggtgcgcaaccttatcagattgcgtaatgaacatgtttcaaaccagaaagccaaacagacaaatattttgtctaagtat |
51527502 |
T |
|
| Q |
471 |
ttctagtccaaacaactctatgaaaacaaaatgtaccgtagcagcaatatcgtgcgtcaccccctccttctttgtgaatgtgattcccttggagtgnnnn |
570 |
Q |
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| T |
51527501 |
ttctagtccaaacaactctatgaaaacaaaatgtaccgtagcagcaatatcgtacgtcaccccctccttctttgtgaatgtgattcccttggagtgtttt |
51527402 |
T |
|
| Q |
571 |
nnncttattttcttatcgactccttcattgtgtctcnnnnnnnngttgaaaaatcctctattgtggtttgttaggtgcagaatt--ttagactacatgtg |
668 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51527401 |
tttcttattttcttatcgactccttcattgtgtttcttttttttgttgaaaaatcctctattgtggtttgttaggtgcagaatttgttagactacatgtg |
51527302 |
T |
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| Q |
669 |
gtgcatacactccgtattatcacgaggtaagtacgtagtttatttataataatatttagataatttttgtcatgctagcttatctcagttg |
759 |
Q |
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| T |
51527301 |
gtgcatacactccgtattatcacgaggtaagtacatagtttatttataataatatttagataatttttgtcatgctagcttatctcagttg |
51527211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 855 - 961
Target Start/End: Complemental strand, 51526674 - 51526567
Alignment:
| Q |
855 |
ttcactaccagatgaccgtaaagaaaacactattggcacgattggaatttgggatagg-agagataaccag-tttttattgtattaaccgaaacaggtgt |
952 |
Q |
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||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||| |||||||||||||||||||||||| | |
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| T |
51526674 |
ttcaccaccacatgactgtaaagaaaacactattggcacgattggaattt-ggacaggaagagatgaccagttttttattgtattaaccgaaacagtgtt |
51526576 |
T |
|
| Q |
953 |
acgtgtcat |
961 |
Q |
| |
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||||||||| |
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| T |
51526575 |
acgtgtcat |
51526567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 784 - 823
Target Start/End: Original strand, 51526751 - 51526790
Alignment:
| Q |
784 |
ttttaaaattattaacattttatttcttatcatacattct |
823 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
51526751 |
ttttaaaattattaacattttatttcttatcatacgttct |
51526790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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