View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351R-Insertion-12 (Length: 530)
Name: NF1351R-Insertion-12
Description: NF1351R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351R-Insertion-12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 9 - 530
Target Start/End: Original strand, 10951253 - 10951776
Alignment:
| Q |
9 |
taatttgctttcatctccaattcactatttttggaatagagtctaattaccggccaaaagtccttcttcctatattagaaatcataaaagtacaatatac |
108 |
Q |
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| T |
10951253 |
taatttgctttcatctccaattcactatttttggaatagagtttaattaccggccaaaagtccttcttcctatattagaaatcataaaagtacaatatac |
10951352 |
T |
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| Q |
109 |
aatataacgtggttggtacaaagaaatcatagtaagttaagaatgtgtacataaatactcta--gtgtgagatttaaaatttaatcttttctgaattaca |
206 |
Q |
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| T |
10951353 |
aatataacgtggttggtacaaagaaatcatagtaagttaagaatgtgtacataaatactctatagtgtgagatttaaaatttaatcttttctgaattaca |
10951452 |
T |
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| Q |
207 |
tattaagtcaatttcttagaatttggatttcatctaaatcattacaaaactaatttatttgttatgattatataccacttataaagtttggcctaacata |
306 |
Q |
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| T |
10951453 |
tattaagtcaatttcttagaatttggatttcatctaaatcattacaaaactaatttatttgttatgattatataccacttataaagtttggcctaacata |
10951552 |
T |
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| Q |
307 |
tatgtttagagagttaaaacaaatttttctagtaattattttaaagcaaatgataggacgggttctctccaaactttcatagaaggtcgatagtgtttct |
406 |
Q |
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| T |
10951553 |
tatgtttagagagttaaaacaattttttctagtaattattttaaagcaaatgataggacgggttctctccaaactttcatagaaggtggatagtgtttct |
10951652 |
T |
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| Q |
407 |
catcgtgatgttggattggtcgcttttttgatacaatttctatttatagaaaagaaagtaaccattctaaaataaaatgaaaaataacacaagactttta |
506 |
Q |
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| T |
10951653 |
catcgtgatgttggattggtcgcttttttgataaaatttctatttatagaaaagaaagtaaccattctaaaataaaatgaaaaataacacaagactttta |
10951752 |
T |
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| Q |
507 |
gacaaaaagcaaagttttacttag |
530 |
Q |
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| T |
10951753 |
gacaaaaagcaaagttttacttag |
10951776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 9 - 530
Target Start/End: Original strand, 10959258 - 10959781
Alignment:
| Q |
9 |
taatttgctttcatctccaattcactatttttggaatagagtctaattaccggccaaaagtccttcttcctatattagaaatcataaaagtacaatatac |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10959258 |
taatttgctttcatctccaattcactatttttggaatagagtttaattaccggccaaaagtccttcttcctatattagaaatcataaaagtacaatatac |
10959357 |
T |
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| Q |
109 |
aatataacgtggttggtacaaagaaatcatagtaagttaagaatgtgtacataaatactcta--gtgtgagatttaaaatttaatcttttctgaattaca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10959358 |
aatataacgtggttggtacaaagaaatcatagtaagttaagaatgtgtacataaatactctatagtgtgagatttaaaatttaatcttttctgaattaca |
10959457 |
T |
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| Q |
207 |
tattaagtcaatttcttagaatttggatttcatctaaatcattacaaaactaatttatttgttatgattatataccacttataaagtttggcctaacata |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10959458 |
tattaagtcaatttcttagaatttggatttcatctaaatcattacaaaactaatttatttgttatgattatataccacttataaagtttggcctaacata |
10959557 |
T |
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| Q |
307 |
tatgtttagagagttaaaacaaatttttctagtaattattttaaagcaaatgataggacgggttctctccaaactttcatagaaggtcgatagtgtttct |
406 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10959558 |
tatgtttagagagttaaaacaattttttctagtaattattttaaagcaaatgataggacgggttctctccaaactttcatagaaggtggatagtgtttct |
10959657 |
T |
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| Q |
407 |
catcgtgatgttggattggtcgcttttttgatacaatttctatttatagaaaagaaagtaaccattctaaaataaaatgaaaaataacacaagactttta |
506 |
Q |
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| T |
10959658 |
catcgtgatgttggattggtcgcttttttgataaaatttctatttatagaaaagaaagtaaccattctaaaataaaatgaaaaataacacaagactttta |
10959757 |
T |
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| Q |
507 |
gacaaaaagcaaagttttacttag |
530 |
Q |
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|||||||||||||||||||||||| |
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| T |
10959758 |
gacaaaaagcaaagttttacttag |
10959781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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