View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351R-Insertion-13 (Length: 442)
Name: NF1351R-Insertion-13
Description: NF1351R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351R-Insertion-13 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 11 - 442
Target Start/End: Original strand, 42213468 - 42213899
Alignment:
| Q |
11 |
ccgtggtaacagaagaaagtcttcgccgtttgttgaagagaatgactattctgcttcattcgattctggtgcgaacatctggttggctttctggttgtgt |
110 |
Q |
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| T |
42213468 |
ccgtggtaacagaagaaagtcttcgccgtttgttgaagagaatgactattctgcttcattcaattctggtgcgaacatctggttggctttctggttgtgt |
42213567 |
T |
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| Q |
111 |
ttagtaacaagctcctactttctgttgagcaaaaaagtcaactttttcagtggctgcagagttaaacctgaagagaatgcttctttagctaacagaagca |
210 |
Q |
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| T |
42213568 |
ttagtaacaagctcctactttctgttgagcaaaaaagtcaactttttcagtggctgcagagttaaacctgaagagaatgcttctttagctaacagaagca |
42213667 |
T |
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| Q |
211 |
ttccaaatgaaagaacagataatatcaatgatgcaacttctgtagatgatgcacttagctactctgacggcttagggtctccccacagtacttgttcatc |
310 |
Q |
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| T |
42213668 |
ttccaaatgaaagaacagataatatcaatgatgcaacttctgtagatgatgcacttagctactctgacggcttagggtctccccacagtacttgttcatc |
42213767 |
T |
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| Q |
311 |
cacctattacgacgctttctctgagatttcagattttgacggaacaagttactggcactctttgctaaatcttgacgaggaagacaatggatggctctca |
410 |
Q |
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| T |
42213768 |
cacctattacgacgctttctctgagatttcagattttgacggaacaagttacgggcactctttgctaagtcttgacgaggaagacaatggatggctctca |
42213867 |
T |
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| Q |
411 |
gattcaatgacatctgagaacccttcaactcc |
442 |
Q |
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| T |
42213868 |
gattcaatgatatctgagaacccttcaactcc |
42213899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 442
Target Start/End: Original strand, 42206640 - 42207069
Alignment:
| Q |
16 |
gtaacagaagaaagtcttcgccgtttgttgaagagaatgactattctgcttcattcgattctggtgcgaacatctggttggctttctggttgtgtttagt |
115 |
Q |
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| T |
42206640 |
gtaacaaaagaaggtcttcgtcgtttgttgaagagaacgactattctgcttcattccatttggatgctaacagctggttgcctttttggttgtgtttagt |
42206739 |
T |
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| Q |
116 |
aacaagctcctactttctgttgagcaaaaaagtcaactttttcagtggctgcagagttaaacctgaagagaatgcttctttagctaacagaagcattcca |
215 |
Q |
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| T |
42206740 |
gacaagctcctactttctgttgagggacaatatcaattttttcagcagcagcagagtaaaatatgaagagaatgtttctttacataacaaaagcattcca |
42206839 |
T |
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| Q |
216 |
aatgaaagaacagataatatcaatgatgcaacttctgtagatgatgcacttagctactctgacggcttagggtctccccacagtacttgttcatccacct |
315 |
Q |
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| T |
42206840 |
aatgaaagaagagataatatcaatgatgcaactgctgtagatgatgcacttagctactctgagggctcagggtctccccatagtacttgttcatccacct |
42206939 |
T |
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| Q |
316 |
attacgacgctttctctgagatttcagattttgacggaacaagttactggcactctttgctaaatcttgacgaggaagacaatggatggctct---caga |
412 |
Q |
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|||| |||| |||||| ||||||||||||||||| |||| |||||| ||||||||||||||| |||||| |||||||||| || ||| ||| |||| |
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| T |
42206940 |
attatgacgttttctccgagatttcagattttgatagaactagttaccggcactctttgctaagtcttgaagaggaagacattgattgggtctcagcaga |
42207039 |
T |
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| Q |
413 |
ttcaatgacatctgagaacccttcaactcc |
442 |
Q |
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| T |
42207040 |
ttcaatgacacctgagaatccttcaactcc |
42207069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 436
Target Start/End: Original strand, 42214214 - 42214295
Alignment:
| Q |
355 |
caagttactggcactctttgctaaatcttgacgaggaagacaatggatggctctcagattcaatgacatctgagaacccttc |
436 |
Q |
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| T |
42214214 |
caagttactcgcattctttactaagtcttgaagaggaagactctgcatggctctcagattcaatgatctctgaggacccttc |
42214295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 436
Target Start/End: Original strand, 42214013 - 42214094
Alignment:
| Q |
355 |
caagttactggcactctttgctaaatcttgacgaggaagacaatggatggctctcagattcaatgacatctgagaacccttc |
436 |
Q |
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||||||||| ||| ||||| |||| |||||| ||||||||| || |||||| |||||||||||| ||||||||| ||||| |
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| T |
42214013 |
caagttactcgcattctttactaagtcttgaagaggaagactctgaatggctttcagattcaatggtatctgagaatccttc |
42214094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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