View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351R-Insertion-16 (Length: 287)
Name: NF1351R-Insertion-16
Description: NF1351R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351R-Insertion-16 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 34730963 - 34730827
Alignment:
| Q |
9 |
aaaaccttatacaaacttgtaacaatgtaaaaagtaaacatcttaatttagaaattcctatacattaaaatcaatccaaactcaattttannnnnnnnga |
108 |
Q |
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| T |
34730963 |
aaaaccttatacaaacttgtaacaatgtaaaaagtaaacatcttaatttagaaattcctatacattaaaatcaatccaaactcaa--atattttttttga |
34730866 |
T |
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| Q |
109 |
aaagactgcaatccaaacttagatctacgcgtatatact |
147 |
Q |
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| T |
34730865 |
aaagactacaatccaaacttagatctacgcgtatatact |
34730827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 149 - 284
Target Start/End: Complemental strand, 34730737 - 34730597
Alignment:
| Q |
149 |
aattgtggcgatgatttggtgctatatata--atcaattttcaatcatcattaattccacgtgctccaattccctcaggcatggaccaagac------ca |
240 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34730737 |
aattgtggtgatgatttggtgctatatatataatcaattttcaatcat---taattccacgtgctccaattccctcaggcatggaccaagaccaactgca |
34730641 |
T |
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| Q |
241 |
gctgcaggcacatgctcactttatggccccacttcccccaccat |
284 |
Q |
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| T |
34730640 |
gctgcaggcacatgctcactttatggccccacttcccccaccat |
34730597 |
T |
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