View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351R-Insertion-17 (Length: 200)
Name: NF1351R-Insertion-17
Description: NF1351R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351R-Insertion-17 |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 16842973 - 16842782
Alignment:
| Q |
9 |
gtaatgacatcaaccaagccttgtttcttaggcataaaatacaacctccgcacaacaatgctatatgcaatcacatccaacgaatttggtgaagaagaca |
108 |
Q |
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| T |
16842973 |
gtaatgacatcaaccaagccttgtttcttaggcataaaatacaacctccgcacaacaatgctatatgcaatcacatccaacgaatttggtgaagaagaca |
16842874 |
T |
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| Q |
109 |
tcttcaactttagatgtaacatctctgcatctttgaagcgtcccataacactataaatatcgatccttgtacaaacaatgtgcttgttcagc |
200 |
Q |
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| T |
16842873 |
tcttcaactttagatgtaacatctctgcatctttgaagcgtcccataacactataaatatcgatccttgtacaaacaatgtgcttgttcagc |
16842782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 24209839 - 24209694
Alignment:
| Q |
55 |
tccgcacaacaatgctatatgcaatcacatccaacgaatttggtgaagaagacatcttcaactttagatgtaacatctctgcatctttgaagcgtcccat |
154 |
Q |
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| T |
24209839 |
tccgcacaacaatgctatatgcaatcatatccaacgaatttggtgaagaagacttcttcaactttagatacaacatctctgcatctttgaagcatcccat |
24209740 |
T |
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| Q |
155 |
aacactataaatatcgatccttgtacaaacaatgtgcttgttcagc |
200 |
Q |
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| T |
24209739 |
gacactataaatatcgatcattgtacaaacaatgtgcttgttcagc |
24209694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 24210236 - 24210191
Alignment:
| Q |
12 |
atgacatcaaccaagccttgtttcttaggcataaaatacaacctcc |
57 |
Q |
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| T |
24210236 |
atgacatcaaccaagccttgtttcttagccataaaatacaacctcc |
24210191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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