View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351R-Insertion-18 (Length: 195)
Name: NF1351R-Insertion-18
Description: NF1351R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351R-Insertion-18 |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 4e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 30287745 - 30287933
Alignment:
| Q |
7 |
cattgatgagactcaatattacctataactttgataaaaatcaataatggccacatagaaacatagtatgataaaattacaaaatacaaatagtgtactt |
106 |
Q |
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| T |
30287745 |
cattgatgatactcaacattaccgataactttgataaaaatcaataatggccaaatagaaacatagtatgataaaattacaaaatacaactagtgtactt |
30287844 |
T |
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| Q |
107 |
tcccgcgccatgccaacataaattaaaatttggcattctctctaaactcattcgaggagctaatccatataactaataacctacttaac |
195 |
Q |
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| T |
30287845 |
tcccgtgccatgccaacataaattaaaatttggcattctctctaaactcattcgaggagctaatccatataactaatgacctacttaac |
30287933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 53 - 195
Target Start/End: Complemental strand, 41706195 - 41706057
Alignment:
| Q |
53 |
atggccacatagaaacatagtatgataaaattacaaaatacaaatagtgtactttcccgcgccatgccaacataaattaaaatttggcattctctctaaa |
152 |
Q |
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| T |
41706195 |
atggccaaataaaaacatagtatgataaaattacaaaatacaactagcgtactttccc-----atgccaacataaattaaaatttggcattctctctaaa |
41706101 |
T |
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| Q |
153 |
ctcattcgaggagctaatcca-tataactaataacctacttaac |
195 |
Q |
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| T |
41706100 |
ctcattcgaggagctaatccattatacctaacgacctacttaac |
41706057 |
T |
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