View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351R-Insertion-19 (Length: 177)
Name: NF1351R-Insertion-19
Description: NF1351R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351R-Insertion-19 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 9e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 9e-81
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 1630121 - 1629949
Alignment:
| Q |
9 |
ctcctttaatctctttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggctttctta----ca |
104 |
Q |
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| T |
1630121 |
ctcctttaatctctttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggctttcttacatgca |
1630022 |
T |
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| Q |
105 |
tacaattactttaattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttcac |
177 |
Q |
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| T |
1630021 |
tacaattactttcattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttcac |
1629949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 10820598 - 10820749
Alignment:
| Q |
22 |
tttttattttatcatttgaagttctaaatttttataataagataggtttataatatttaaattatacttgaggctttcttacatacaattactttaattt |
121 |
Q |
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| T |
10820598 |
tttttattttatattttgaagttctaaaattttatactaagataggtttataatatttaaattataattgtggctttcttacctacaattactttcatat |
10820697 |
T |
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| Q |
122 |
tttattttaaataattactcttggatcatttaaatttaggtattgatggacttcac |
177 |
Q |
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| T |
10820698 |
----ttttaaataattactcttggatcatttaaatttaggtattgatggacttcac |
10820749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 1606689 - 1606651
Alignment:
| Q |
139 |
ctcttggatcatttaaatttaggtattgatggacttcac |
177 |
Q |
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| T |
1606689 |
ctcttggatcatttaaatttaggtattgatggacttcac |
1606651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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